Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02307 ATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCCAGTCGGGGTTGATGGCAATGGCCAGCTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAAAGTCTGTGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGATGAGAACTTGCTGATGGATGCTGATACAAAGAGATCAGGAGATCGAAACACTATGGCATCTCATCTCAGTCATTCTCAGGACGTTGGTGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAATTGAATGATGAATCTGGGAACCCTATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCTGCCGTGAAAACTGAACAGGAAGCTCAAATTCCCGTCCATCAACAAATGGAGGAGAAACAGATTTCAGAGGAGGCTGCGGTTACACACTCATTTTCTTCAGTTTATCCAATTCCTTCCAGCAGATTAACACCATACAGAATCGTGATAATCATGCGATTGATCATTCTAGCTCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGAGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCTCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCGATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAATTCTCCATTGAACCTCGAGCTCCTGAGTTTTACTTCTCCCAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGCAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAACCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACCGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCTAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCTGCAGTTCTCACAAACGCCCCCTTCATTCTCAACCTTGATTGTGATCATTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCAGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACTGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGGATCCAGGGACCAGTATACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTACGGACCTCCTACACTGCCTAGCTTATCGAAGAAATCATCATCATCATCCTGCTCCTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGATTTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCGGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCGGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCATGAGGCCAGCATTCAAAGGATCAGCCCCGATTAACCTTTCCGATCGTCTGCACCAAGTTCTTCGATGGGCACTCGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTCGCAGGCGGACGACTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACTTCCCTCCCTCTCGTTGCCTACTGCTCGTTGCCTGCAATCTGCCTGTTGACGGGGAAATTCATCATACCAACGCTCTCGAACCTAGCGAGTACCCTTTTTCTCGGTCTCTTCCTGTCCATCATTCTCACAAGTGTTCTTGAGCTGCGTTGGAGTGGTGTTAGCATTGAAGATATATGGCGTAACGAACAGTTTTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCCGGCATTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGATGCTGAGTTCGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTTATTGTCGTTAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACAGGACGCCTACCATTGTTGTTTTATGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATAAACCCATTTGTGAACCAAGTTGACAGTACAACCGTTGCACAGAGCTGCATTGCAATAGATTGTTGA 2955 44.2 MMVSDVPICHTCGEPVGVDGNGQLFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPAVKTEQEAQIPVHQQMEEKQISEEAAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKKSSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLGEIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPMRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC* 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20190683 20197801 + CsaV3_1G033150.1 Csa01g02307 516804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02307 984 MobiDBLite consensus disorder prediction 122 144 - -
Csa01g02307 984 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 407 547 IPR029044 -
Csa01g02307 984 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 80 IPR013083 -
Csa01g02307 984 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] 2 984 - -
Csa01g02307 984 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 553 582 IPR017896 -
Csa01g02307 984 SUPERFAMILY RING/U-box 3 73 - -
Csa01g02307 984 Pfam Zinc-binding RING-finger 7 58 IPR027934 -
Csa01g02307 984 Pfam Cellulose synthase 255 974 IPR005150 GO:0016020|GO:0016760|GO:0030244
Csa01g02307 984 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 2 984 - -
Csa01g02307 984 SUPERFAMILY Nucleotide-diphospho-sugar transferases 269 777 IPR029044 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02307 Csa-Chr1:20190683 Csa04g01082 Csa-Chr4:8832210 0 dispersed
Csa06g00745 Csa-Chr6:6057109 Csa01g02307 Csa-Chr1:20190683 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02307 K10999 - csv:101208988 1975.29