Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02307 | ATGATGGTTTCTGATGTTCCCATTTGCCACACTTGTGGTGAGCCAGTCGGGGTTGATGGCAATGGCCAGCTTTTCGTTGCTTGCCATGAGTGCCATTTTCCTATTTGTAAAGTCTGTGTTCAGTATGATATTAAGGAAGGCCGAAATGTTTGCTTGCGGTGTGGCTCTCCATTTGATGAGAACTTGCTGATGGATGCTGATACAAAGAGATCAGGAGATCGAAACACTATGGCATCTCATCTCAGTCATTCTCAGGACGTTGGTGTTCATGCTAGACATGTCAGTAGTGTGTCGACAGTGGATAGTGAATTGAATGATGAATCTGGGAACCCTATTTGGAAGAACAGAGTAGAGAGTTGGAAGGATAAGAAGAATAAAAAGAAACGGCCTGCCGTGAAAACTGAACAGGAAGCTCAAATTCCCGTCCATCAACAAATGGAGGAGAAACAGATTTCAGAGGAGGCTGCGGTTACACACTCATTTTCTTCAGTTTATCCAATTCCTTCCAGCAGATTAACACCATACAGAATCGTGATAATCATGCGATTGATCATTCTAGCTCTTTTCTTTCAGTATCGAATAACAAATCCTGTTGATAGTGCTTTTGGTCTATGGCTCACTTCTATCATATGCGAAATCTGGTTTGCCTTCTCCTGGGTGTTGGATCAGTTCCCTAAATGGTTTCCCGTCTGCAGAGACACATTCATTGACAGATTATCGGCCAGGTTTGAAAGAGAGGGAGAACCTTCTCAGCTTGCTGCTGTGGATTTTTTTGTGAGTACTGTTGATCCATTGAAAGAACCTCCACTAATCACTGCCAATACCGTGCTTTCGATCCTTGCTGTGGACTATCCTGTCGATAAAGTTTCCTGCTATGTGTCTGACGATGGTGCAGCTATGCTTACATTTGAATCTCTAGTTGAAACAGCCGACTTTGCAAGAATGTGGGTTCCATTCTGCAAGAAATTCTCCATTGAACCTCGAGCTCCTGAGTTTTACTTCTCCCAGAAAATAGACTATTTGAAAGATAAAGTGCAACCTTCTTTTGTCAAGGAACGCAGAGCAATGAAAAGAGCTTATGAAGAGTTTAAAGTACGAGTCAATGCTTTGGTAGCAAAGGCTCAGAAAACGCCAGATGAAGGCTGGTCCATGCAAGATGGAACAGCTTGGCCAGGAAATAACCCACGTGACCACCCTGGAATGATTCAGGTTTTTCTTGGAAATACCGGCGCCCATGACATAGAGGGTAATGAACTTCCTCGACTAGTCTATGTCTCTAGAGAGAAGAGGCCTGGTTACCAACATCACAAAAAAGCTGGTGCTGAAAATGCTCTGGTGAGAGTATCTGCAGTTCTCACAAACGCCCCCTTCATTCTCAACCTTGATTGTGATCATTATGTTAACAATAGCCAAGCTATACGTGAGGCAATGTGTTTCTTGATGGACCCACAAGTAGGCAGAGATGTATGCTATGTTCAATTTCCTCAGAGGTTTGATGGCATTGATCGAAGTGATCGATATGCCAATCGCAACACTGTTTTCTTTGATGTGAACATGAAAGGATTGGATGGGATCCAGGGACCAGTATACGTGGGTACAGGTTGTGTTTTCAATAGACAGGCTCTTTATGGCTACGGACCTCCTACACTGCCTAGCTTATCGAAGAAATCATCATCATCATCCTGCTCCTGGTGTGGCTGCTGCTCGTGCTGCTGTCCTTCCAAGAAGATTTCAAAAGATCCGACTGAGATTCAGAGAGATGCAAAAAGAGAAGAGCTTGATGCTGCAATCTTTAACCTCGGGGAAATAGATAATTATGATGAGTACGAGAGGTCAATGCTAATTTCTCAATTGAGCTTTGAGAAAACTTTTGGCTTATCTTCTGTATTTATTGAGTCTACACTAATGGAAAATGGAGGAGTTGCAGAATCTGCAAATCCATCGACTTTGATCAAAGAAGCAATTCATGTCATTGGCTGTGGTTATGAAGAGAAGACTGCCTGGGGAAAAGAGATTGGTTGGATATACGGTTCGGTCACTGAGGATATCTTAACGGGTTTCAAGATGCATTGCCGAGGATGGAGGTCCATCTACTGCATGCCCATGAGGCCAGCATTCAAAGGATCAGCCCCGATTAACCTTTCCGATCGTCTGCACCAAGTTCTTCGATGGGCACTCGGATCTGTTGAGATTTTTCTCAGTAGACATTGTCCATTATGGTATGGATTCGCAGGCGGACGACTCAAATGGCTCCAAAGAATGGCATACATAAACACCATTGTCTATCCGTTCACTTCCCTCCCTCTCGTTGCCTACTGCTCGTTGCCTGCAATCTGCCTGTTGACGGGGAAATTCATCATACCAACGCTCTCGAACCTAGCGAGTACCCTTTTTCTCGGTCTCTTCCTGTCCATCATTCTCACAAGTGTTCTTGAGCTGCGTTGGAGTGGTGTTAGCATTGAAGATATATGGCGTAACGAACAGTTTTGGGTCATAGGAGGCGTCTCAGCCCATCTCTTTGCTGTCTTCCAAGGGTTCCTAAAGATGTTAGCCGGCATTGACACCAACTTCACAGTTACTGCAAAGGCAGCTGACGATGCTGAGTTCGGAGAGCTTTACATGGTGAAATGGACAACACTTTTGATCCCTCCTACAACTCTTATTGTCGTTAACATGGTCGGTGTCGTTGCTGGATTTTCTGATGCATTAAATGGTGGATATGAAGCTTGGGGACCTCTTTTTGGCAAGGTCTTCTTTGCCTTCTGGGTGATTTTTCATCTCTATCCATTCCTCAAAGGTCTCATGGGTCGCCAAAACAGGACGCCTACCATTGTTGTTTTATGGTCAGTACTGTTGGCATCAGTTTTCTCACTTGTTTGGGTGAAGATAAACCCATTTGTGAACCAAGTTGACAGTACAACCGTTGCACAGAGCTGCATTGCAATAGATTGTTGA | 2955 | 44.2 | MMVSDVPICHTCGEPVGVDGNGQLFVACHECHFPICKVCVQYDIKEGRNVCLRCGSPFDENLLMDADTKRSGDRNTMASHLSHSQDVGVHARHVSSVSTVDSELNDESGNPIWKNRVESWKDKKNKKKRPAVKTEQEAQIPVHQQMEEKQISEEAAVTHSFSSVYPIPSSRLTPYRIVIIMRLIILALFFQYRITNPVDSAFGLWLTSIICEIWFAFSWVLDQFPKWFPVCRDTFIDRLSARFEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFESLVETADFARMWVPFCKKFSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRAYEEFKVRVNALVAKAQKTPDEGWSMQDGTAWPGNNPRDHPGMIQVFLGNTGAHDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPFILNLDCDHYVNNSQAIREAMCFLMDPQVGRDVCYVQFPQRFDGIDRSDRYANRNTVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPTLPSLSKKSSSSSCSWCGCCSCCCPSKKISKDPTEIQRDAKREELDAAIFNLGEIDNYDEYERSMLISQLSFEKTFGLSSVFIESTLMENGGVAESANPSTLIKEAIHVIGCGYEEKTAWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPMRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGFAGGRLKWLQRMAYINTIVYPFTSLPLVAYCSLPAICLLTGKFIIPTLSNLASTLFLGLFLSIILTSVLELRWSGVSIEDIWRNEQFWVIGGVSAHLFAVFQGFLKMLAGIDTNFTVTAKAADDAEFGELYMVKWTTLLIPPTTLIVVNMVGVVAGFSDALNGGYEAWGPLFGKVFFAFWVIFHLYPFLKGLMGRQNRTPTIVVLWSVLLASVFSLVWVKINPFVNQVDSTTVAQSCIAIDC* | 985 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20190683 | 20197801 | + | CsaV3_1G033150.1 | Csa01g02307 | 516804 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02307 | 984 | MobiDBLite | consensus disorder prediction | 122 | 144 | - | - | |
Csa01g02307 | 984 | Gene3D | Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 407 | 547 | IPR029044 | - | |
Csa01g02307 | 984 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 80 | IPR013083 | - | |
Csa01g02307 | 984 | PANTHER | CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 8 [UDP-FORMING] | 2 | 984 | - | - | |
Csa01g02307 | 984 | ProSiteProfiles | 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. | 553 | 582 | IPR017896 | - | |
Csa01g02307 | 984 | SUPERFAMILY | RING/U-box | 3 | 73 | - | - | |
Csa01g02307 | 984 | Pfam | Zinc-binding RING-finger | 7 | 58 | IPR027934 | - | |
Csa01g02307 | 984 | Pfam | Cellulose synthase | 255 | 974 | IPR005150 | GO:0016020|GO:0016760|GO:0030244 | |
Csa01g02307 | 984 | PANTHER | X-BOX TRANSCRIPTION FACTOR-RELATED | 2 | 984 | - | - | |
Csa01g02307 | 984 | SUPERFAMILY | Nucleotide-diphospho-sugar transferases | 269 | 777 | IPR029044 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02307 | Csa-Chr1:20190683 | Csa04g01082 | Csa-Chr4:8832210 | 0 | dispersed | |
Csa06g00745 | Csa-Chr6:6057109 | Csa01g02307 | Csa-Chr1:20190683 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02307 | K10999 | - | csv:101208988 | 1975.29 |