Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02318 ATGGAGAAAAAGGGAAGCATTTTAATGCAAAGATACGAGCTTGGTAGAATGCTTGGACAAGGCACATTTGCTAAAGTCTACCATGCTCGTAATCTCAAGTCTGGCCAGAGTGTCGCTATTAAAATCATTGACAAAGAGAAAGTTCTACGCGTTGGGTTGATCGACCAAATCAAAAGGGAAATCTCTGTGATGCGGCTTGTTCGTCATCCTAATGTGGTGCAGCTTTATGAGGTTATGGCTAGCCGGACCAAAATCTATTTTGCTATGGAGTATGTTAGAGGTGGGGAGCTTTTCAATAAAGTGGCTAAAGGAAAGCTTAAGGAAGATGCTGCTCGTAAGTATTTTCAACAGCTTATTGGTGCTGTTGATTATTGTCATAGTCGTGGTGTGTATCATAGAGATATTAAACCTGAAAATCTCCTTCTTGATGAGTATGGGAATCTTAAGATTTCGGATTTTGGGTTGAGTGCTTTGGCTGAATCTAGAAGACAAGATGGGCTTCTTCATACAACTTGTGGTACCCCTGCTTATGTTGCCCCTGAAGTCATCAACAAGAAAGGTTATGACGGTGCTAAAGCTGATATTTGGTCATCTGGGGTTGTCCTGTTCGTTCTTCTTGCTGGCTATCTCCCTTTCCACGATCCAAATCTGATGGAAATGTACAGAAAAATCTCAAGAGGAGAATTCAAATGCCCTCAATGGTTTCCCCCAGAAGTTCGAAAGCTTCTCTCAAGAATCCTAGACCCAAGTCCTCGCACCAGAATAAACATGGCCAAACTCATGGAAAATTCCTGGTTCAAGAAAGGTTTCAAAGAAAATGTAACCACTCCAAAACAACTTCAAAACGACGAAGACATGTCGTCTGTGAGCGACGTTAGTTCTGCTTTCAGCGATATTAGTTCGGAAGGAGGAAGCTCTGTTAGCAACACCAATGAGAGTGGAAGGCCACCAACAGCTACAAGAGCTCCAATAAGAAATAATTCCTTCAATGCATTTGACCTCATATCTCTCTCACCAGGCTTTGATCTCTCAGGTCTATTTGAGAGTGATGTGAATGAAAGACTACAGTCTCGTTTCACAACGACGAAACCAGCTTCAGCTATCGTGTCGAAGTTGGAAGAGATAGCGGAAATGGAAAGGTTTAAGGTGATGAAGAAAGATGGGATTGTGAAACTACAAGGGAGCAAACAGGGGAGGAAAGGACAATTGGCAATAGATGCTGAGATATTTGAAGTAACGCCTTCTTTTTCTGTGGTGGAAGTGAAGAAAACTGCTGGAGATACATTGGAATATAGGCAGTTTTATGACAAAGATATGAGACCTTGCCTTAAAGATATTGTATGGACTTGGGAAGGAAATGAGCAGCAGCAGCAGCAACCACAAACTGTTTAG 1392 42.03 MEKKGSILMQRYELGRMLGQGTFAKVYHARNLKSGQSVAIKIIDKEKVLRVGLIDQIKREISVMRLVRHPNVVQLYEVMASRTKIYFAMEYVRGGELFNKVAKGKLKEDAARKYFQQLIGAVDYCHSRGVYHRDIKPENLLLDEYGNLKISDFGLSALAESRRQDGLLHTTCGTPAYVAPEVINKKGYDGAKADIWSSGVVLFVLLAGYLPFHDPNLMEMYRKISRGEFKCPQWFPPEVRKLLSRILDPSPRTRINMAKLMENSWFKKGFKENVTTPKQLQNDEDMSSVSDVSSAFSDISSEGGSSVSNTNESGRPPTATRAPIRNNSFNAFDLISLSPGFDLSGLFESDVNERLQSRFTTTKPASAIVSKLEEIAEMERFKVMKKDGIVKLQGSKQGRKGQLAIDAEIFEVTPSFSVVEVKKTAGDTLEYRQFYDKDMRPCLKDIVWTWEGNEQQQQQPQTV* 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20282952 20285596 - CsaV3_1G033260.1 Csa01g02318 516815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02318 463 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Csa01g02318 463 MobiDBLite consensus disorder prediction 295 324 - -
Csa01g02318 463 PANTHER - 2 460 - -
Csa01g02318 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Csa01g02318 463 Gene3D Kinase associated domain 1, KA1 325 449 - -
Csa01g02318 463 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02318 463 CDD CIPK_C 330 444 - -
Csa01g02318 463 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02318 463 Gene3D Transferase(Phosphotransferase) domain 1 3 316 - -
Csa01g02318 463 ProSiteProfiles NAF domain profile. 324 348 IPR018451 GO:0007165
Csa01g02318 463 Pfam NAF domain 327 385 IPR004041 GO:0007165
Csa01g02318 463 CDD STKc_SnRK3 11 265 - -
Csa01g02318 463 SUPERFAMILY Protein kinase-like (PK-like) 8 327 IPR011009 -
Csa01g02318 463 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02318 463 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 20 2 460 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02318 Csa06g03710 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01874 Csa-Chr1:15751776 Csa01g02318 Csa-Chr1:20282952 0 dispersed
Csa01g02318 Csa-Chr1:20282952 Csa02g00268 Csa-Chr2:1847249 0 dispersed
Csa03g02975 Csa-Chr3:28361183 Csa01g02318 Csa-Chr1:20282952 5.58E-33 dispersed
Csa01g02575 Csa-Chr1:22662732 Csa01g02318 Csa-Chr1:20282952 1.54E-172 transposed
Csa02g02229 Csa-Chr2:20005697 Csa01g02318 Csa-Chr1:20282952 8.24E-145 transposed
Csa03g00767 Csa-Chr3:6741087 Csa01g02318 Csa-Chr1:20282952 7.13E-169 transposed
Csa03g01559 Csa-Chr3:11613345 Csa01g02318 Csa-Chr1:20282952 5.84E-134 transposed
Csa04g01217 Csa-Chr4:10801059 Csa01g02318 Csa-Chr1:20282952 4.85E-163 transposed
Csa04g01680 Csa-Chr4:16146628 Csa01g02318 Csa-Chr1:20282952 6.08E-78 transposed
Csa06g01609 Csa-Chr6:13847653 Csa01g02318 Csa-Chr1:20282952 8.83E-179 transposed
Csa06g03811 Csa-Chr6:30243812 Csa01g02318 Csa-Chr1:20282952 5.02E-170 transposed
Csa01g02318 Csa-Chr1:20282952 Csa06g03710 Csa-Chr6:29666281 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77827 PF00069 Pkinase 1.70E-72 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02318 K07198 - csv:101206082 868.996