Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02327 ATGATGGGAGAGAGAAAACATGATAAGAATAATGAAGATCAACATGAAGATCAACAATCACTAGAGAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGTATGGATACAAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCTAGGCATTTCTGTAAGGGCTGCCAGAGGTATTGGACTGCCGGCGGGGCCCTTCGCAACGTTCCCATCGGAGCCGGCCGTCGTAAAACCAAGCCCCCTTGTCGAACCTTTGGTGGGTTGCCGGAGAATTGTGTGTTTGATTCTTCAGGGATTAATGTCACGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGAAGTGGCATGTCGTCGCTGCCGCCGCCACACAAGGTGGTTTTCGGCAAATTTTACCGGTAAAGAGGCGGAGGGATTGTCCTGATGGTCAAACTTGTTGA 447 47.2 MMGERKHDKNNEDQHEDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCRTFGGLPENCVFDSSGINVTVQPFELEGMVEKWHVVAAAATQGGFRQILPVKRRRDCPDGQTC* 149
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20417930 20418478 + CsaV3_1G033350.1 Csa01g02327 516824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02327 148 ProSiteProfiles Zinc finger Dof-type profile. 29 83 IPR003851 GO:0003677|GO:0006355
Csa01g02327 148 ProSitePatterns Zinc finger Dof-type signature. 31 67 IPR003851 GO:0003677|GO:0006355
Csa01g02327 148 PANTHER CYCLIC DOF FACTOR 2 9 141 IPR045174 GO:0003700|GO:0006355
Csa01g02327 148 MobiDBLite consensus disorder prediction 1 23 - -
Csa01g02327 148 PANTHER DOF ZINC FINGER PROTEIN DOF1.5-LIKE 9 141 - -
Csa01g02327 148 Pfam Dof domain, zinc finger 27 82 IPR003851 GO:0003677|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02327 Csa06g03703 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02327 Csa-Chr1:20417930 Csa03g03825 Csa-Chr3:33707030 5.84E-36 dispersed
Csa01g02327 Csa-Chr1:20417930 Csa06g03703 Csa-Chr6:29624602 5.75E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30772 PF02701 zf-Dof 4.60E-32 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02327 - - csv:101204978 308.531