Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02327 | ATGATGGGAGAGAGAAAACATGATAAGAATAATGAAGATCAACATGAAGATCAACAATCACTAGAGAAAAGGCCTGAGAAGATCATCCCTTGCCCAAGATGCAAAAGTATGGATACAAAATTTTGTTACTTCAATAATTACAATGTTAATCAGCCTAGGCATTTCTGTAAGGGCTGCCAGAGGTATTGGACTGCCGGCGGGGCCCTTCGCAACGTTCCCATCGGAGCCGGCCGTCGTAAAACCAAGCCCCCTTGTCGAACCTTTGGTGGGTTGCCGGAGAATTGTGTGTTTGATTCTTCAGGGATTAATGTCACGGTTCAACCGTTTGAGTTGGAAGGGATGGTCGAGAAGTGGCATGTCGTCGCTGCCGCCGCCACACAAGGTGGTTTTCGGCAAATTTTACCGGTAAAGAGGCGGAGGGATTGTCCTGATGGTCAAACTTGTTGA | 447 | 47.2 | MMGERKHDKNNEDQHEDQQSLEKRPEKIIPCPRCKSMDTKFCYFNNYNVNQPRHFCKGCQRYWTAGGALRNVPIGAGRRKTKPPCRTFGGLPENCVFDSSGINVTVQPFELEGMVEKWHVVAAAATQGGFRQILPVKRRRDCPDGQTC* | 149 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 20417930 | 20418478 | + | CsaV3_1G033350.1 | Csa01g02327 | 516824 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02327 | 148 | ProSiteProfiles | Zinc finger Dof-type profile. | 29 | 83 | IPR003851 | GO:0003677|GO:0006355 | |
Csa01g02327 | 148 | ProSitePatterns | Zinc finger Dof-type signature. | 31 | 67 | IPR003851 | GO:0003677|GO:0006355 | |
Csa01g02327 | 148 | PANTHER | CYCLIC DOF FACTOR 2 | 9 | 141 | IPR045174 | GO:0003700|GO:0006355 | |
Csa01g02327 | 148 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Csa01g02327 | 148 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.5-LIKE | 9 | 141 | - | - | |
Csa01g02327 | 148 | Pfam | Dof domain, zinc finger | 27 | 82 | IPR003851 | GO:0003677|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g02327 | Csa06g03703 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02327 | Csa-Chr1:20417930 | Csa03g03825 | Csa-Chr3:33707030 | 5.84E-36 | dispersed | |
Csa01g02327 | Csa-Chr1:20417930 | Csa06g03703 | Csa-Chr6:29624602 | 5.75E-49 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30772 | PF02701 | zf-Dof | 4.60E-32 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02327 | - | - | csv:101204978 | 308.531 |