Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02345 ATGGCTGATGTTGGTCAGAACAACCCCGCTGATTTTCCAGCTCTCCCAACCCATGGTGGCCAATACGTTCAGTATAACATTTTTGGGAATCCCTTCGAAATCACCTCCAAATATCGTCCTCCGATTATGCCTATTGGTCGCGGCGCATACGGAATCGTTTGTTCTGTTTTGAATTCGGAGACCAACGAAATGGTTGCGGTTAAGAAGATTGCTAACGCGTTTGATAACCATATGGATGCGAAGAGAACGCTCCGTGAGATTAAGCTTCTACGCCATTTGGATCATGAAAATGTAATAGGCATAAGAGATGTGATTCCTCCACCTTTACGGAGAGAATTCAATGATGTCTACATTTCGACTGAACTAATGGATACTGATCTTCACCAAATAATCCGCTCCAACCAAAGTTTATCAGAAGAGCATTGTCAGTATTTCCTTTATCAGATTCTCAGAGGACTGAAATACATACATTCGGCAAATGTCATTCATCGAGACTTGAAACCAAGCAATCTATTGCTTAATGCAAACTGTGATCTTAAAATATGTGACTTTGGTCTTGCTCGACCAACTTCTGAAAATGAATGCATGACGGAATATGTTGTGACAAGATGGTACAGAGCACCTGAGCTTCTTTTGAACTCTGATTATACAGCTGCAATCGATATATGGTCTGTTGGTTGCATCTTTCTGGAGCTTATGAATAGAAGGCCTTTATTTCCAGGCAGGGATCATGTGCATCAGATGAGATTATTGACTGAGCTTCTTGGCACACCAAGCGAGTCAGATCTTGGTTTTATTCGAAATGAAGACTCGAAAAGATATCTTCGACAACTACCTCCACATCCTCGTCAGCCATTAGCAACGGTTTTTCCACATGTTCATCCATTAGCAATTGATCTTGTGGATAAAATGTTGACATTTGACCCAACAAAGAGAATTACTGTTGAAGAAGCGTTAGCACATCCGTACCTAGAAAGATTGCATGACATAGCTGATGAGCCGGTTTGCTCAGAGCCATTCTCGTTTGAGTTTGAGCAACAATACTTAGACGAAGAACAGATGAAGGAGATGATTTACAGAGAGGCATTGGCACTCAATCCAGAATTTGCATGA 1113 41.42 MADVGQNNPADFPALPTHGGQYVQYNIFGNPFEITSKYRPPIMPIGRGAYGIVCSVLNSETNEMVAVKKIANAFDNHMDAKRTLREIKLLRHLDHENVIGIRDVIPPPLRREFNDVYISTELMDTDLHQIIRSNQSLSEEHCQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNANCDLKICDFGLARPTSENECMTEYVVTRWYRAPELLLNSDYTAAIDIWSVGCIFLELMNRRPLFPGRDHVHQMRLLTELLGTPSESDLGFIRNEDSKRYLRQLPPHPRQPLATVFPHVHPLAIDLVDKMLTFDPTKRITVEEALAHPYLERLHDIADEPVCSEPFSFEFEQQYLDEEQMKEMIYREALALNPEFA* 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20622744 20626161 + CsaV3_1G033530.1 Csa01g02345 516842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02345 370 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
Csa01g02345 370 CDD STKc_TEY_MAPK 32 367 - -
Csa01g02345 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 369 - -
Csa01g02345 370 Gene3D Transferase(Phosphotransferase) domain 1 123 351 - -
Csa01g02345 370 SUPERFAMILY Protein kinase-like (PK-like) 44 331 IPR011009 -
Csa01g02345 370 ProSiteProfiles Protein kinase domain profile. 39 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02345 370 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Csa01g02345 370 SMART serkin_6 39 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02345 370 Gene3D Phosphorylase Kinase; domain 1 22 361 - -
Csa01g02345 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Csa01g02345 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 15 369 - -
Csa01g02345 370 Pfam Protein kinase domain 44 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02345 Csa-Chr1:20622744 Csa06g02048 Csa-Chr6:18328621 0 dispersed
Csa06g02422 Csa-Chr6:21605091 Csa01g02345 Csa-Chr1:20622744 2.58E-116 dispersed
Csa01g02345 Csa-Chr1:20622744 Csa06g00083 Csa-Chr6:532725 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77829 PF00069 Pkinase 3.80E-74 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02345 K20536 - csv:101202796 752.666