Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02374 ATGGGTAGAGGCGGTGAAAACTACGGGAAAAAAGAGGTTTTTGCTACTACCTCATCGAAGAAAGAAACGTATCCAGCCTGGGCGAGAGATGTTCAAGAATGCTTAGAGATATACCAAGTGAACCCTGATCTTGGATTATCAACTGAAGAGGTTGAAAACAAGAGAAAGATCTATGGTTACAATGAGTTGGAGAAACATGAAGGTACTTCAATCTTTAAACTGATTTTGGAACAATTTAATGACACACTAGTTAGGATTCTATTAGCGGCAGCAGTTGTATCTTTTGTTCTTGCGTGGTATGATGGAGAGGAAGGAGGTGAGATGGAGATCACAGCATTTGTGGAGCCTCTAGTTATTTTCTTGATATTGATTGTTAATGCCATTGTTGGCATTTGGCAAGAGAATAATGCTGAGAAAGCATTGGAAGCTCTTAAAGAAATTCAGTCTGAACAGGCTTCAGTATTACGAAATGGTAAACGAACTTCAATTCTTGCAAAAGAACTTGTTCCCGGTGATATAGTAGAACTCAGAGTTGGGGATAAGGTGCCTGCTGACGTGAGAGTATTGCGTTTAATCAGCTCTACTTTTCGAGTTGAGCAAGGTTCCTTGACAGGTGAGAGTGAAGCAGTGAGCAAGACTTCTAAGGCTGTGCCAGAAGATTCAGATATACAAGGGAAAAAATGTATGGCTTTTGCAGGGACAACAGTTGTAAATGGGAATTGTATTTGCATTGTTACCCAAACAGGAATGAGCACTGAACTCGGACAGGTGCATTGTCAGATACAAGAAGCAGCCCAGAGCGAAGATGATACACCATTGAAGAAGAAGTTGAATGAGTTTGGAGAGCTTCTAACAGCAATAATTGGAGTGATCTGTGCTCTAGTTTGGCTTATTAATGTCAAATACTTCCTCACTTGGGAATACGTCGATGGTTGGCCTGCAAATTTTAAGTTCTCATTTGAGAAATGTACATATTACTTTGAGATTGCTGTGGCATTGGCTGTGGCAGCAATTCCAGAAGGTTTACCTGCAGTCATAACAACATGCTTGGCACTTGGCACTAGGAAGATGGCCCAAAAAAATGCCCTTGTTCGTAAGCTGCCCAGTGTTGAAACACTTGGCTGTACAACTGTGATATGTTCTGATAAGACAGGTACTCTAACGACTAATCAGATGGCTGTGGCGAAAATTGTGGCTCTTGGTTCTCGTGTTGGTACTCTACGAGCCTTTGATGTGGAGGGGACTACATATGATCCTTTGGATGGAAAAATAATTGGTTGGCTTGGAGGTCAACTGGATGCTAATCTACAAATGCTGGGAAAGATTGCTGCCGTTTGTAATGATGCAGGTGTTGAAAAATCTGGCCATCATTTTGTTGCAAATGGAATGCCTACTGAAGCAGCTTTGAAGGTTCTTGTGGAAAAGATGGGGCTTCCTGAAGGATATGACTCAAGTTCAGTTGAAACTAATGGGGATGTCCTGCGATGCTGCCAAGCTTGGAACAAGAATGAGCAACGCATTGCTACTTTGGAGTTTGACCGGGACCGGAAATCCATGGGAGTTATCACAAATTCTAAATCGGGGAAGAAATCATTACTCGTGAAGGGTGCTGTTGAAAATCTTCTGGATCGGAGTTCATTTATTCAGCTGCTTGATGGAACTATAGTGAATTTGGACTCAGACTCGAAGAGATGTATATTAGATTGTTTGCGTGAGATGTCTTCTAGTGCACTAAGGTGTTTAGGCTTTGCATACAAGGAATATCTTCCAGAATTTTCTGATTATACTATTGGTGACGAAGATCATCCAGCACATCAGCTTCTTCTTGACCCATCCAAATACTCTACAATTGAAAGCAATCTTATTTTTGCTGGCTTTGTTGGGTTAAGGGATCCTCCTCGAAAAGAGGTTCATCAAGCAATTCAAGACTGTAAAGCTGCTGGTATTCGCGTCATGGTTATCACAGGAGACAACCAGAACACAGCTGAAGCTATATGTCGAGAAATAGGTGTATTTGGACAACATGAAGCTATAAATTCCAGAAGTTTAACTGGGAAAGAATTCATGACAATGAGCCGGGAGGATCAGAAATTTCATCTAAGACAAGATGGAGGACTTCTTTTCTCTAGGGCTGAACCAAAACATAAACAAGAGATAGTAAGATTGCTCAAGGAAGATGGTGAAGTTGTTGCAATGACAGGAGATGGAGTCAATGATGCACCTGCCTTGAAGTTGGCTGATATTGGGATTGCGATGGGCATTGCTGGGACAGAGGTTGCAAAGGAAGCCTCTGATATGGTTCTTGCCGATGACAATTTCAGTACCATAGTCGCAGCAGTTGGTGAAGGAAGATCAATTTACGACAACATGAAGGCCTTTATCAGGTACATGATTTCCTCGAATATCGGTGAGGTTGCATCGATATTTTTGACAGCAGCACTGGGTATTCCCGAAGGGATGATCCCTGTTCAGCTTCTCTGGGTTAATCTTGTTACAGATGGACCCCCAGCAACTGCATTGGGATTTAATCCACCTGATAACGATATAATGAAGAAACCGCCAAGGAAAAGTGATGACTCATTGATCACAACATGGATTTTGTTCCGCTATTTGGTGATTGGACTCTACGTAGGGTTAGCAACTGTAGGCGTTTTTATTATTTGGTTTACACATGGTTCATTCTTGGGCATCGACCTGTCTGGAGATGGTCACAGCCTTGTCTCTTACTCTCAGCTTGCCAACTGGGGTCAGTGCCCGTCTTGGGAAGGATTCTCCGTGTCACCCTTCACAGCCGGGGATGAAGTCTTCAGCTTCGATTCAGATCCGTGCGAGTATTTCCGCTCAGGCAAGATCAAGGCATCAACCCTCTCACTTTCTGTTCTGGTTGCTATTGAGATGTTCAATTCCCTCAACGCCCTCTCTGAGGACGGTAGCTTGTTGACAATGCCCCCTTGGGTTAACCCCTGGCTCCTCCTCGCCATGTCAGTTTCATTCGGCTTGCACTTTTTGATTCTGTATGTGCCATTCCTCGCCAAGATCTTCGGCATTGTCCCGCTTTCCTTGAATGAATGGCTCTTGGTTCTAGCTGTGGCATTGCCCGTAATCATAATCGATGAGATTCTGAAATTCATTGGAAGACGCACTAGTGGGTTGAGGACTTCTCGCCCGAGCAGATTATCTAAGCAGAAATCTGAGTAA 3198 43.18 MGRGGENYGKKEVFATTSSKKETYPAWARDVQECLEIYQVNPDLGLSTEEVENKRKIYGYNELEKHEGTSIFKLILEQFNDTLVRILLAAAVVSFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGIWQENNAEKALEALKEIQSEQASVLRNGKRTSILAKELVPGDIVELRVGDKVPADVRVLRLISSTFRVEQGSLTGESEAVSKTSKAVPEDSDIQGKKCMAFAGTTVVNGNCICIVTQTGMSTELGQVHCQIQEAAQSEDDTPLKKKLNEFGELLTAIIGVICALVWLINVKYFLTWEYVDGWPANFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKIVALGSRVGTLRAFDVEGTTYDPLDGKIIGWLGGQLDANLQMLGKIAAVCNDAGVEKSGHHFVANGMPTEAALKVLVEKMGLPEGYDSSSVETNGDVLRCCQAWNKNEQRIATLEFDRDRKSMGVITNSKSGKKSLLVKGAVENLLDRSSFIQLLDGTIVNLDSDSKRCILDCLREMSSSALRCLGFAYKEYLPEFSDYTIGDEDHPAHQLLLDPSKYSTIESNLIFAGFVGLRDPPRKEVHQAIQDCKAAGIRVMVITGDNQNTAEAICREIGVFGQHEAINSRSLTGKEFMTMSREDQKFHLRQDGGLLFSRAEPKHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYDNMKAFIRYMISSNIGEVASIFLTAALGIPEGMIPVQLLWVNLVTDGPPATALGFNPPDNDIMKKPPRKSDDSLITTWILFRYLVIGLYVGLATVGVFIIWFTHGSFLGIDLSGDGHSLVSYSQLANWGQCPSWEGFSVSPFTAGDEVFSFDSDPCEYFRSGKIKASTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAKIFGIVPLSLNEWLLVLAVALPVIIIDEILKFIGRRTSGLRTSRPSRLSKQKSE* 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 20923187 20929306 - CsaV3_1G033820.1 Csa01g02374 516871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02374 1065 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1064 - -
Csa01g02374 1065 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Csa01g02374 1065 SUPERFAMILY HAD-like 378 837 IPR036412 -
Csa01g02374 1065 Gene3D - 45 262 - -
Csa01g02374 1065 SFLD p-type atpase 361 785 IPR044492 -
Csa01g02374 1065 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Csa01g02374 1065 Pfam haloacid dehalogenase-like hydrolase 377 747 - -
Csa01g02374 1065 Gene3D - 77 1046 - -
Csa01g02374 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 707 817 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g02374 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 307 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g02374 1065 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 319 401 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa01g02374 1065 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 387 629 IPR023299 GO:0000166
Csa01g02374 1065 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1064 - -
Csa01g02374 1065 Gene3D - 377 778 IPR023214 -
Csa01g02374 1065 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1047 IPR023298 -
Csa01g02374 1065 Pfam E1-E2 ATPase 147 360 - -
Csa01g02374 1065 Gene3D - 390 632 IPR023299 GO:0000166
Csa01g02374 1065 Pfam Cation transporting ATPase, C-terminus 818 1044 IPR006068 -
Csa01g02374 1065 PRINTS P-type cation-transporting ATPase superfamily signature 199 213 - -
Csa01g02374 1065 PRINTS P-type cation-transporting ATPase superfamily signature 380 394 - -
Csa01g02374 1065 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Csa01g02374 1065 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Csa01g02374 1065 PRINTS P-type cation-transporting ATPase superfamily signature 733 752 - -
Csa01g02374 1065 PRINTS P-type cation-transporting ATPase superfamily signature 757 769 - -
Csa01g02374 1065 SUPERFAMILY Calcium ATPase, transduction domain A 149 257 IPR008250 -
Csa01g02374 1065 SFLD C1.7: P-type atpase like 361 785 - -
Csa01g02374 1065 ProSitePatterns E1-E2 ATPases phosphorylation site. 382 388 IPR018303 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02374 Csa-Chr1:20923187 Csa02g00680 Csa-Chr2:5401128 5.88E-110 dispersed
Csa01g02374 Csa-Chr1:20923187 Csa02g01881 Csa-Chr2:17868741 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02374 K01537 - csv:101206729 2092.78