Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02399 | ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCATCATCAGCAATCAAATCATCATCATCATCCTCAGATAAGTAATAGTAATGGATCTCCTCAACATCAACACCTTCTTTCATTGCCAACTCAACAACTCTCGTCCGCACCATCATCTCATGTCGGTGTGGGTGTTGGTGTTGGCTCGATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCAGAGACGGCGCTAAAGTGTCCTCGATGTGATTCTACCAATACGAAGTTTTGTTATTTTAATAACTATAGTCTCTCGCAGCCTCGCCACTTTTGTAAGAGTTGCCGTCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTCCCGGTTGGGGGTGGTTGTCGGAGGAATAAGAAGAATAAAACTAGACGATCGAAGTCTCCAACAGTGGCTGCGACGATGGCGGGTGGAAATGAAAGTCAAGTGATGAATAACCATTCAAACTCTCCTACCACTACTACAATTCCCTTGCATAGTAGTGCTGAGAATCTTATTGGTCATTTACAGCCTCAACACCCTCACCTTTCCTTCATGGCTTCATTGAATAATTTTTCTCGATTCGGAACATCGGGTCTAGGGTTGAATTTCAACGAGATCCAGACTCAAACTAACATTATTGGTAACGGTGCCCTTCTGAATCATCATCCGTGGCGGAGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCAGCCAGGTTTGTACCCGTTTCAAATTAGCGGCGGCGACGGCGATGAAAACAACACAACAAATTCAATCCTAACACCAATTTCAAGGGGAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTACTGAATTTGTTGAAATCATCAAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGATCAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGTGGCCATATTTCTTGTGACTTCAATCATTAA | 1032 | 44.19 | MDFSSVPIYLDPPPNWHHQQSNHHHHPQISNSNGSPQHQHLLSLPTQQLSSAPSSHVGVGVGVGSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPTVAATMAGGNESQVMNNHSNSPTTTTIPLHSSAENLIGHLQPQHPHLSFMASLNNFSRFGTSGLGLNFNEIQTQTNIIGNGALLNHHPWRSSQNFPLSGGLETQPGLYPFQISGGDGDENNTTNSILTPISRGTHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGSNGWTDLSAISSTSSGHISCDFNH* | 344 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 21290901 | 21293102 | - | CsaV3_1G034070.1 | Csa01g02399 | 516896 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02399 | 343 | ProSitePatterns | Zinc finger Dof-type signature. | 89 | 125 | IPR003851 | GO:0003677|GO:0006355 | |
Csa01g02399 | 343 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 28 | 334 | IPR045174 | GO:0003700|GO:0006355 | |
Csa01g02399 | 343 | MobiDBLite | consensus disorder prediction | 25 | 39 | - | - | |
Csa01g02399 | 343 | Pfam | Dof domain, zinc finger | 86 | 141 | IPR003851 | GO:0003677|GO:0006355 | |
Csa01g02399 | 343 | ProSiteProfiles | Zinc finger Dof-type profile. | 87 | 141 | IPR003851 | GO:0003677|GO:0006355 | |
Csa01g02399 | 343 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 28 | 334 | - | - | |
Csa01g02399 | 343 | MobiDBLite | consensus disorder prediction | 11 | 39 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g02399 | Csa06g01499 | CCT | |
Csa01g02399 | Csa06g01499 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02399 | Csa-Chr1:21290901 | Csa05g00707 | Csa-Chr5:4789391 | 1.68E-56 | dispersed | |
Csa06g00852 | Csa-Chr6:6818264 | Csa01g02399 | Csa-Chr1:21290901 | 1.02E-30 | dispersed | |
Csa06g03637 | Csa-Chr6:29298224 | Csa01g02399 | Csa-Chr1:21290901 | 3.29E-35 | dispersed | |
Csa06g03703 | Csa-Chr6:29624602 | Csa01g02399 | Csa-Chr1:21290901 | 1.19E-28 | dispersed | |
Csa01g00332 | Csa-Chr1:2070673 | Csa01g02399 | Csa-Chr1:21290901 | 2.28E-33 | transposed | |
Csa03g04093 | Csa-Chr3:35884340 | Csa01g02399 | Csa-Chr1:21290901 | 1.35E-33 | transposed | |
Csa06g02913 | Csa-Chr6:25274806 | Csa01g02399 | Csa-Chr1:21290901 | 1.78E-32 | transposed | |
Csa01g02399 | Csa-Chr1:21290901 | Csa04g01478 | Csa-Chr4:14585987 | 5.36E-47 | wgd | |
Csa01g02399 | Csa-Chr1:21290901 | Csa06g01499 | Csa-Chr6:12669120 | 1.95E-44 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30779 | PF02701 | zf-Dof | 1.50E-32 | No_clan | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02399 | - | - | csv:101218334 | 661.373 |