Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02399 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCATCATCAGCAATCAAATCATCATCATCATCCTCAGATAAGTAATAGTAATGGATCTCCTCAACATCAACACCTTCTTTCATTGCCAACTCAACAACTCTCGTCCGCACCATCATCTCATGTCGGTGTGGGTGTTGGTGTTGGCTCGATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCAGAGACGGCGCTAAAGTGTCCTCGATGTGATTCTACCAATACGAAGTTTTGTTATTTTAATAACTATAGTCTCTCGCAGCCTCGCCACTTTTGTAAGAGTTGCCGTCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTCCCGGTTGGGGGTGGTTGTCGGAGGAATAAGAAGAATAAAACTAGACGATCGAAGTCTCCAACAGTGGCTGCGACGATGGCGGGTGGAAATGAAAGTCAAGTGATGAATAACCATTCAAACTCTCCTACCACTACTACAATTCCCTTGCATAGTAGTGCTGAGAATCTTATTGGTCATTTACAGCCTCAACACCCTCACCTTTCCTTCATGGCTTCATTGAATAATTTTTCTCGATTCGGAACATCGGGTCTAGGGTTGAATTTCAACGAGATCCAGACTCAAACTAACATTATTGGTAACGGTGCCCTTCTGAATCATCATCCGTGGCGGAGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCAGCCAGGTTTGTACCCGTTTCAAATTAGCGGCGGCGACGGCGATGAAAACAACACAACAAATTCAATCCTAACACCAATTTCAAGGGGAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTACTGAATTTGTTGAAATCATCAAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGATCAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGTGGCCATATTTCTTGTGACTTCAATCATTAA 1032 44.19 MDFSSVPIYLDPPPNWHHQQSNHHHHPQISNSNGSPQHQHLLSLPTQQLSSAPSSHVGVGVGVGSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPTVAATMAGGNESQVMNNHSNSPTTTTIPLHSSAENLIGHLQPQHPHLSFMASLNNFSRFGTSGLGLNFNEIQTQTNIIGNGALLNHHPWRSSQNFPLSGGLETQPGLYPFQISGGDGDENNTTNSILTPISRGTHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGSNGWTDLSAISSTSSGHISCDFNH* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21290901 21293102 - CsaV3_1G034070.1 Csa01g02399 516896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02399 343 ProSitePatterns Zinc finger Dof-type signature. 89 125 IPR003851 GO:0003677|GO:0006355
Csa01g02399 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 334 IPR045174 GO:0003700|GO:0006355
Csa01g02399 343 MobiDBLite consensus disorder prediction 25 39 - -
Csa01g02399 343 Pfam Dof domain, zinc finger 86 141 IPR003851 GO:0003677|GO:0006355
Csa01g02399 343 ProSiteProfiles Zinc finger Dof-type profile. 87 141 IPR003851 GO:0003677|GO:0006355
Csa01g02399 343 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 28 334 - -
Csa01g02399 343 MobiDBLite consensus disorder prediction 11 39 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02399 Csa06g01499 CCT
Csa01g02399 Csa06g01499 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02399 Csa-Chr1:21290901 Csa05g00707 Csa-Chr5:4789391 1.68E-56 dispersed
Csa06g00852 Csa-Chr6:6818264 Csa01g02399 Csa-Chr1:21290901 1.02E-30 dispersed
Csa06g03637 Csa-Chr6:29298224 Csa01g02399 Csa-Chr1:21290901 3.29E-35 dispersed
Csa06g03703 Csa-Chr6:29624602 Csa01g02399 Csa-Chr1:21290901 1.19E-28 dispersed
Csa01g00332 Csa-Chr1:2070673 Csa01g02399 Csa-Chr1:21290901 2.28E-33 transposed
Csa03g04093 Csa-Chr3:35884340 Csa01g02399 Csa-Chr1:21290901 1.35E-33 transposed
Csa06g02913 Csa-Chr6:25274806 Csa01g02399 Csa-Chr1:21290901 1.78E-32 transposed
Csa01g02399 Csa-Chr1:21290901 Csa04g01478 Csa-Chr4:14585987 5.36E-47 wgd
Csa01g02399 Csa-Chr1:21290901 Csa06g01499 Csa-Chr6:12669120 1.95E-44 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30779 PF02701 zf-Dof 1.50E-32 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02399 - - csv:101218334 661.373