Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02399 ATGGATTTCTCTTCTGTTCCAATCTATTTAGATCCTCCTCCCAATTGGCATCATCAGCAATCAAATCATCATCATCATCCTCAGATAAGTAATAGTAATGGATCTCCTCAACATCAACACCTTCTTTCATTGCCAACTCAACAACTCTCGTCCGCACCATCATCTCATGTCGGTGTGGGTGTTGGTGTTGGCTCGATCCGGCGTGGTTCGATGGCGGACCGAGCTCGGATGGCTAACGTACCACTACCAGAGACGGCGCTAAAGTGTCCTCGATGTGATTCTACCAATACGAAGTTTTGTTATTTTAATAACTATAGTCTCTCGCAGCCTCGCCACTTTTGTAAGAGTTGCCGTCGATATTGGACTCGTGGGGGTGCCCTAAGGAACGTCCCGGTTGGGGGTGGTTGTCGGAGGAATAAGAAGAATAAAACTAGACGATCGAAGTCTCCAACAGTGGCTGCGACGATGGCGGGTGGAAATGAAAGTCAAGTGATGAATAACCATTCAAACTCTCCTACCACTACTACAATTCCCTTGCATAGTAGTGCTGAGAATCTTATTGGTCATTTACAGCCTCAACACCCTCACCTTTCCTTCATGGCTTCATTGAATAATTTTTCTCGATTCGGAACATCGGGTCTAGGGTTGAATTTCAACGAGATCCAGACTCAAACTAACATTATTGGTAACGGTGCCCTTCTGAATCATCATCCGTGGCGGAGTTCCCAAAACTTTCCTCTCTCAGGTGGCCTAGAAACCCAGCCAGGTTTGTACCCGTTTCAAATTAGCGGCGGCGACGGCGATGAAAACAACACAACAAATTCAATCCTAACACCAATTTCAAGGGGAACCCATTTGCCTCCAGTGAAGATTGAAGAAACCCAAGTACTGAATTTGTTGAAATCATCAAATTTGGGTATCAATAATTCTGAAAACAATCAATTTTGGAGCAATGGATCAAATGGTTGGACAGATCTTTCAGCTATCAGTTCTACTTCAAGTGGCCATATTTCTTGTGACTTCAATCATTAA 1032 44.19 MDFSSVPIYLDPPPNWHHQQSNHHHHPQISNSNGSPQHQHLLSLPTQQLSSAPSSHVGVGVGVGSIRRGSMADRARMANVPLPETALKCPRCDSTNTKFCYFNNYSLSQPRHFCKSCRRYWTRGGALRNVPVGGGCRRNKKNKTRRSKSPTVAATMAGGNESQVMNNHSNSPTTTTIPLHSSAENLIGHLQPQHPHLSFMASLNNFSRFGTSGLGLNFNEIQTQTNIIGNGALLNHHPWRSSQNFPLSGGLETQPGLYPFQISGGDGDENNTTNSILTPISRGTHLPPVKIEETQVLNLLKSSNLGINNSENNQFWSNGSNGWTDLSAISSTSSGHISCDFNH* 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21290901 21293102 - CsaV3_1G034070.1 Csa01g02399 516896

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02399 343 ProSitePatterns Zinc finger Dof-type signature. 89 125 IPR003851 GO:0003677|GO:0006355
Csa01g02399 343 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 334 IPR045174 GO:0003700|GO:0006355
Csa01g02399 343 MobiDBLite consensus disorder prediction 25 39 - -
Csa01g02399 343 Pfam Dof domain, zinc finger 86 141 IPR003851 GO:0003677|GO:0006355
Csa01g02399 343 ProSiteProfiles Zinc finger Dof-type profile. 87 141 IPR003851 GO:0003677|GO:0006355
Csa01g02399 343 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 28 334 - -
Csa01g02399 343 MobiDBLite consensus disorder prediction 11 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02399 - - - csv:101218334 661.373
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Csa01g02399 Csa06g01499 CCT
Csa01g02399 Csa06g01499 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02399 Csa-Chr1:21290901 Csa05g00707 Csa-Chr5:4789391 1.68E-56 dispersed
Csa06g00852 Csa-Chr6:6818264 Csa01g02399 Csa-Chr1:21290901 1.02E-30 dispersed
Csa06g03637 Csa-Chr6:29298224 Csa01g02399 Csa-Chr1:21290901 3.29E-35 dispersed
Csa06g03703 Csa-Chr6:29624602 Csa01g02399 Csa-Chr1:21290901 1.19E-28 dispersed
Csa01g00332 Csa-Chr1:2070673 Csa01g02399 Csa-Chr1:21290901 2.28E-33 transposed
Csa03g04093 Csa-Chr3:35884340 Csa01g02399 Csa-Chr1:21290901 1.35E-33 transposed
Csa06g02913 Csa-Chr6:25274806 Csa01g02399 Csa-Chr1:21290901 1.78E-32 transposed
Csa01g02399 Csa-Chr1:21290901 Csa04g01478 Csa-Chr4:14585987 5.36E-47 wgd
Csa01g02399 Csa-Chr1:21290901 Csa06g01499 Csa-Chr6:12669120 1.95E-44 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g427 . Blo03g01238 . . . Bpe08g01366 Bma14g00500 Bma07g01538 Cmo13g00132 . Cma01g00595 Cma13g00133 Car01g00540 Car13g00103 Sed08g2509 Cpe05g00913 Cpe20g00813 Bhi08g00258 Tan01g2611 Cmetu12g0765 . Hepe10g1082 . . Cla02g01976 Cam02g2096 Cec02g2134 Cco02g2164 Clacu02g2084 Cmu02g2021 Cre02g2330 Cone1ag0649 Cone5ag1158 . . Lsi02g01364 Csa06g01499 Chy11g01243 Cme11g01283 . . . Bda09g00153 . . . . Sed01g0886 . Cmo20g00451 Cma02g00812 . Car02g00587 . . . Bhi10g00686 Tan05g0376 Cmetu11g2570 . Hepe10g1221 . . Cla03g00153 Cam03g0159 Cec03g0158 Cco03g0165 Clacu03g0162 Cmu03g0779 Cre03g0474 . Csa01g02399 Chy12g00184 Cme12g00200
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02327 CCT 22 149 C2C2-Dof Transcription Factor Family AT1G29160 66.7 1.2e-42 169.9
Csa06g03703 CCT 6 164 C2C2-Dof Transcription Factor Family AT1G29160 51.4 2.1e-39 159.1
Csa05g00179 . 1 96 C2C2-Dof Transcription Factor Family AT1G64620 76.7 5.2e-42 168.7
Csa01g02327 CCT 9 149 C2C2-Dof Transcription Factor Family AT2G34140 55.8 3.1e-40 161.8
Csa06g03703 CCT 6 172 C2C2-Dof Transcription Factor Family AT2G34140 50.3 7.6e-39 157.1
Csa03g03190 CCT,ECH 1 129 C2C2-Dof Transcription Factor Family AT2G37590 66.7 9.2e-41 164.5
Csa05g00707 . 1 129 C2C2-Dof Transcription Factor Family AT2G37590 63.1 1.1e-38 157.5
Csa05g01834 . 1 133 C2C2-Dof Transcription Factor Family AT2G37590 65.5 2.8e-37 152.9
Csa01g02399 CCT,ECH 65 139 C2C2-Dof Transcription Factor Family AT2G37590 89.3 4.7e-37 152.1
Csa05g00179 . 1 94 C2C2-Dof Transcription Factor Family AT4G24060 79.8 7.1e-44 174.9
Csa01g02399 CCT,ECH 1 139 C2C2-Dof Transcription Factor Family AT5G02460 57.1 9.4e-40 161.4
Csa04g01478 CCT,ECH 42 122 C2C2-Dof Transcription Factor Family AT5G02460 82.7 1.2e-37 154.5
Csa03g03190 CCT,ECH 46 132 C2C2-Dof Transcription Factor Family AT3G55370 78.2 2.4e-37 153.3
Csa04g01478 CCT,ECH 43 176 C2C2-Dof Transcription Factor Family AT3G55370 57.9 5.3e-37 152.1
Csa01g00332 CCT 28 339 C2C2-Dof Transcription Factor Family AT5G60850 51.4 5.7e-45 178.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005685 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 0 3 1 0 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30779 PF02701 zf-Dof 1.50E-32 No_clan Csa TF