Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02400 ATGGAGGAAGATAACAGTGGTCTTCTTATTCAGAGTTTGATCGATGCTGTTAATGAAATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAACAGTATTGTAATTTGTCTAGGAGATTGAAGCTTTTGATTCCAATGTTTGAAGAGATTAGAGATAGTAAAGACCGTATTACTGAAGATACTCTTAAGGCTCTTGTTTTGTTGAAAGAAGCTCTTGAATCTGCTAAGAAGTTGCTCAGATTTGGCAGCGAAGGGAGTAAGATTTTCTTGGCTGTAGAGAGGGATCAAATAATGAACAAATTTCACGAGGTAACTGCTCAGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTAGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAATTCAGAAGGGCCAGAGGCAGGGCCGAAGCTCCTGACTCTGAGCTGTCGGAAGATATCCTTGCCCTTAACAACATGAGCAATGATTCTTCTATAGATCAAGACCGCATGAGGAGACTGTCCGAAAAATTACAGTTAATAGGAATATCCGATCTTACACAAGAATCAATAGCTTTGCATGAGATGGTTGCTGCTACTGATGGTGATCCAGGTCAAAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTATGTGCAAACGGAGAACCTCGAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACATGTATCCAATGATAAAAATAACAAGACCCCAATTATACCCGATGATTTTCGCTGCCCAATTTCCCTGGAATTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGGAGCAGGGCATGTGACATGTCCAAAGACACAACAGAACCTCTCAAGCACTACTCTTACCCCGAATTATGTGTTGCGTAGCCTTATAGCTCAATGGTGTGAGGCCAACGGTATTGAACCACCAAAACGACCCAACAGTGCTCGACCATGTAGAAGCTCATCATCTTGCTCAGCTGCTGAACGCACAAAAATTGATATTCTTCTTTGCAAACTCGCTTCTGGAAATCCGGAAGATCAACGATCTGCAGCCGGTGAGATTCGACTACTTGCAAAACGGAATGCAGATAATCGTGTTGCTATTGCTGAGGCTGGTGCTATTCCTCTCCTTGTCGGCCTTCTTTCAACTCCGGACTCCCGTGTTCAAGAGCATGCTGTGACAGCACTTCTTAACCTCTCTATATGTGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCAGTTCCTGGTATCGTTCTCGTGCTAAAAAAGGGAAGCATGGAAGCACGGGAAAATGCAGCAGCCACTCTTTTCAGCCTTTCGGTTATCGATGAAAACAAAGTTAGAATTGGCGCCTCCGGAGCTATCCCACCTCTGGTTACACTGCTTAGTGAAGGCACACAAAGAGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGAAGGGCAGTAAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACGCCCGGAACCGGAATGGTAGATGAAGCCTTAGCTATCTTAGCTATACTCGCTAGCCACTCCGAAGGGAAAGGTGCCATCAGATCTGCAAAGGCAGTCCCGGTTTTGGTAGATGTGATTGGGACAGGATCCCCCAGGAACAGAGAAAATGCGGCTGCAGTTCTCGTGCACCTCTGCTCGGGAGACGAGCAACTCCTAGTAGAGGCCAGAGAACTTGGAGTGATTAGTTCATTGATAGATTTGGCACGCAATGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATAAACCGACTGTTTGAGCATGCAGCAGCAAATCCGGAAGAGGTTGGGGTGCTTCGGTTGCAAGCGTCGGAATCTCAACCTCAAAGCCAACCATCACAATCAACCTCAACAACGGAAGTCGTTGGTAGCTGA 2016 45.19 MEEDNSGLLIQSLIDAVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKDRITEDTLKALVLLKEALESAKKLLRFGSEGSKIFLAVERDQIMNKFHEVTAQLEQALEGIAYDKLDISDEVKEQVELVLAQFRRARGRAEAPDSELSEDILALNNMSNDSSIDQDRMRRLSEKLQLIGISDLTQESIALHEMVAATDGDPGQSIEKMAGLLKKIKDYVQTENLETDTPSREKSPPASCSGHVSNDKNNKTPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLGAGHVTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPNSARPCRSSSSCSAAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVIDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGRAVRAGVVPTLMQLLTPGTGMVDEALAILAILASHSEGKGAIRSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQLLVEARELGVISSLIDLARNGTDRGKRKAAQLLERINRLFEHAAANPEEVGVLRLQASESQPQSQPSQSTSTTEVVGS* 672
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21307088 21311908 - CsaV3_1G034080.1 Csa01g02400 516897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02400 671 MobiDBLite consensus disorder prediction 649 671 - -
Csa01g02400 671 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 646 - -
Csa01g02400 671 Pfam U-box domain 259 329 IPR003613 GO:0004842|GO:0016567
Csa01g02400 671 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 397 439 IPR000225 GO:0005515
Csa01g02400 671 SUPERFAMILY RING/U-box 254 335 - -
Csa01g02400 671 PANTHER U BOX DOMAIN-CONTAINING 7 646 - -
Csa01g02400 671 ProSiteProfiles U-box domain profile. 258 332 IPR003613 GO:0004842|GO:0016567
Csa01g02400 671 SMART arm_5 386 426 IPR000225 GO:0005515
Csa01g02400 671 SMART arm_5 468 508 IPR000225 GO:0005515
Csa01g02400 671 SMART arm_5 591 631 IPR000225 GO:0005515
Csa01g02400 671 SMART arm_5 549 589 IPR000225 GO:0005515
Csa01g02400 671 SMART arm_5 427 467 IPR000225 GO:0005515
Csa01g02400 671 SMART arm_5 509 548 IPR000225 GO:0005515
Csa01g02400 671 CDD RING-Ubox_PUB 263 305 IPR045210 -
Csa01g02400 671 MobiDBLite consensus disorder prediction 235 256 - -
Csa01g02400 671 MobiDBLite consensus disorder prediction 228 257 - -
Csa01g02400 671 SMART Ubox_2 262 325 IPR003613 GO:0004842|GO:0016567
Csa01g02400 671 Gene3D - 534 635 IPR011989 -
Csa01g02400 671 MobiDBLite consensus disorder prediction 644 671 - -
Csa01g02400 671 SUPERFAMILY ARM repeat 357 629 IPR016024 -
Csa01g02400 671 Gene3D - 9 118 IPR036537 GO:0007166
Csa01g02400 671 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 259 332 IPR013083 -
Csa01g02400 671 Pfam Armadillo/beta-catenin-like repeat 469 507 IPR000225 GO:0005515
Csa01g02400 671 Pfam Armadillo/beta-catenin-like repeat 386 425 IPR000225 GO:0005515
Csa01g02400 671 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515
Csa01g02400 671 Gene3D - 345 533 IPR011989 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02400 Csa06g01498 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01820 Csa-Chr2:17465490 Csa01g02400 Csa-Chr1:21307088 1.26E-60 dispersed
Csa05g02223 Csa-Chr5:25008453 Csa01g02400 Csa-Chr1:21307088 2.61E-49 dispersed
Csa07g01631 Csa-Chr7:16808258 Csa01g02400 Csa-Chr1:21307088 1.54E-20 dispersed
Csa01g03462 Csa-Chr1:31605249 Csa01g02400 Csa-Chr1:21307088 2.41E-17 transposed
Csa03g02707 Csa-Chr3:25874739 Csa01g02400 Csa-Chr1:21307088 9.95E-87 transposed
Csa03g04286 Csa-Chr3:37521661 Csa01g02400 Csa-Chr1:21307088 1.01E-15 transposed
Csa04g01786 Csa-Chr4:17512154 Csa01g02400 Csa-Chr1:21307088 1.47E-07 transposed
Csa05g01046 Csa-Chr5:10336742 Csa01g02400 Csa-Chr1:21307088 4.40E-166 transposed
Csa05g02038 Csa-Chr5:23691822 Csa01g02400 Csa-Chr1:21307088 6.19E-130 transposed
Csa05g02538 Csa-Chr5:26833398 Csa01g02400 Csa-Chr1:21307088 1.03E-15 transposed
Csa05g02787 Csa-Chr5:28504015 Csa01g02400 Csa-Chr1:21307088 0 transposed
Csa06g00194 Csa-Chr6:1333768 Csa01g02400 Csa-Chr1:21307088 1.26E-121 transposed
Csa06g01017 Csa-Chr6:8283110 Csa01g02400 Csa-Chr1:21307088 1.19E-165 transposed
Csa06g01954 Csa-Chr6:17644201 Csa01g02400 Csa-Chr1:21307088 1.64E-19 transposed
Csa06g03185 Csa-Chr6:27062677 Csa01g02400 Csa-Chr1:21307088 1.80E-09 transposed
Csa06g03568 Csa-Chr6:28914795 Csa01g02400 Csa-Chr1:21307088 1.71E-62 transposed
Csa06g02200 Csa-Chr6:19847220 Csa01g02400 Csa-Chr1:21307088 8.97E-32 transposed
Csa01g02400 Csa-Chr1:21307088 Csa06g01498 Csa-Chr6:12659968 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02400 - - csv:101218572 1218.76