Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02423 ATGCCTAAAACCGCCATTCTCCTCTGCATTGCATCTCTCATTTCAACAATGTGGCCGGCTGCCGCCAGAATTCCTGGCATCTACTCCGGCGGTCCATGGGAGAGTGCCCACGCCACGTTCTACGGCGGCTCTGACGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAATTTGTACAGCCAGGGGTATGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTCAACAATGGGCTGAGCTGTGGTGCTTGTTTCGAAATTAAATGTGCGAATGACCCAAGATGGTGCCATTCCGGCAGCCCGTCGATTGTTATTACGGCTACTAATTTCTGCCCTCCCAACTTTGCTTTGCCCAGTGATAATGGCGGGTGGTGTAATCCTCCTCGCCCGCATTTCGATTTGGCTATGCCTATGTTTCTCAAGATTGCTGAGTATCGCGCCGGAATAGTTCCCGTCGCCTACCGCCGAGTGGGATGTCGTAAACCGGGAGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTCTTAGTGACCAACGTGGCGGGTGCAGGAGATATCGTGAAGGTGAGCGTGAAAGGCACGCGAACCGGGTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTTTTAGTGGGTCAGGCCTTGTCTTTTAGAGTCACCGGCAGTGACAGACGGACCTCCACCTCCATCAACGTCGCACCCTCTGATTGGCAGTTCGGCCAAACCTTCACCGGCAAGAATTTTAGGGTTTGA 780 54.49 MPKTAILLCIASLISTMWPAAARIPGIYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIVITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVGCRKPGGIRFTIHGFRYFNLVLVTNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSINVAPSDWQFGQTFTGKNFRV* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21492231 21494342 - CsaV3_1G034310.1 Csa01g02423 516920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02423 259 Gene3D - 22 161 IPR036908 -
Csa01g02423 259 PANTHER EXPANSIN-A15 5 258 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Csa01g02423 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Csa01g02423 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Csa01g02423 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Csa01g02423 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576
Csa01g02423 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576
Csa01g02423 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Csa01g02423 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Csa01g02423 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Csa01g02423 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Csa01g02423 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664
Csa01g02423 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664
Csa01g02423 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Csa01g02423 259 Gene3D - 165 257 IPR036749 -
Csa01g02423 259 PANTHER EXPANSIN 5 258 - -
Csa01g02423 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Csa01g02423 259 SMART dpbb_1 68 155 IPR007112 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02423 Csa06g01479 CCT
Csa01g02423 Csa06g01479 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02423 Csa-Chr1:21492231 Csa05g01856 Csa-Chr5:21845772 5.56E-149 dispersed
Csa03g00346 Csa-Chr3:2855660 Csa01g02423 Csa-Chr1:21492231 3.05E-98 dispersed
Csa05g01432 Csa-Chr5:15429738 Csa01g02423 Csa-Chr1:21492231 2.10E-91 dispersed
Csa07g00211 Csa-Chr7:1682194 Csa01g02423 Csa-Chr1:21492231 9.87E-90 dispersed
Csa01g02423 Csa-Chr1:21492231 Csa04g01497 Csa-Chr4:14702397 1.47E-165 wgd
Csa01g02423 Csa-Chr1:21492231 Csa05g00717 Csa-Chr5:4890874 3.66E-164 wgd
Csa01g02423 Csa-Chr1:21492231 Csa06g01479 Csa-Chr6:12545225 2.11E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02423 - - csv:101206662 547.354