Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02434 ATGGATAATCTCCTCGACGATTTTCCCAATTCTTGGAGTAATAATTATCCCTTCCATCCCTATCTTTCTAATTCTCTGTTTAAAGTCAATCGTGATGCCGTCGATCCCCTTCAGATTCCGGCTAAATCACATCAACACCAACTCCAACACCACCAACTTACTAACAATTCCTCCTCCTCCCCCTCTTCCTCTAGCTCCGAAGGAGATTCTCCCGATAGTCATGACACCTCTAACACCATGCTCAAATACATCACCGAGATGTTGATGGATGAAGCTGAAGATCTCAAAACACAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGTCAGAAGTATCCCCCCTCTCCAACCGCTGATTCTTCTAGCTGTGATAGAGCTTTAGGAGGTGAAGATGAATCTGAATCTTTTAATGGTAACTCTAACTCCTCTCTTTTTCACCCTTTTCAAAACTCTGTTTTAAGTCAAGATTCGTTTCTTGGGATGCAATTTCTTGGCCATTTTAGACAAGGAGCTGAGGAAGCTAGTAAGTTTCTTCCTGTTAATGGAAGATTTGGAACCATTGCCTTGGATAATGATTCTTCTAGTTCTACCTCTTTTCCTTCTAGGCCAGTTGATTTTTCTTGGGTTGCTGCTGAGAATGATGGTAGATCCACCCTTGAAAATGGGTTGTTAAGAGAGAAGAAAAACCGTTTGAGGGAAGATAGTGATGAGGAGTTGAGAAGTAGTAAACAATCTGCTAATTTTGTTGATGATAATTCACTGTCTGACTTGTTTGATGAGGTTCTTCTTTGTCGTGGCGAGAGTCGGCAGTCTCCGCCGTCGTGTGGTTCCGATGAATCCTCCGAGAGCGAAGCCAATAAGAAATCGAGAGGGAGAGGGAAAAGGAAAGGGAAGAAAAGTAGTCGTTCTAGGAAGCAAGAGAACAGTGTGGAAGTTGTGGATTTGTGGACATTGTTAACTCAATGTGCTCAAGCTGTTTCAAATTATGATCAAAGAACTGCCAATGAACTGCTCAATCAAATCAGGCAGCATTCTAATCCATCTGGGGATGGTAATCAAAGATTAGCTCATTACTTTGCTAAGGGTCTCGAGACTCGTCTTGCCGCTGGTACGCCTCTATATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCGTGCCCGTTTCGGCGGATGTCATATTTCTATGGCAATAGAACAATTCTGAAGTTAGCCGAGAAAGTAACAACATTGCATATTGTTGATTTTGGGCTTTTGTATGGTCTCCAATGGCCCTGCTTGATTCAAAGGCTTTCGCGTAGACCTGGTGGACCTCCGAAGCTTCGGATAACAGGGATCGAGCTTCCCCAGCCAGGATTCCGCCCTGCTGAACGTGTTGAGCAGACGGGTCGTCGACTTGCACATTACTGCAAGAGATTCAATGTCCCATTTGAACACAAGGTCTTGGCACAAAAATGGGAAACGGTTCGATATGAGGATCTGAATGTTGATAGAGATGAACTGACTATTGTAACTTGTATGTTCCGAATGAAGAACGTACCGGACGAAACAGTAGTCGCAAACAGCCCGAGAGACAGGGTTCTAAAGTTGATCAGGAAAATCAATCCAGATCTCTTCATTCACGAAGTCACCAATGGTTCATTCAACACTCCATTTTTCAACACAAGGTTTAAAGAGGCACTCTTTTACTACTCGTCGTTGTTCGACATGTACGAAGCAACAGTGCCTCGAGACAATCCCCAGAGGTTTCTGTGTGAGAAGGAAATCCTAGGAAGAGACATCATGAATGTGATAGCGTGCGAGGGGCTTGAGAGAGTGGAAAGGCCAGAGACATACAAGCAATGGCAAGTGAGGAACACAAGGGCCGGGTTCAAGCAAGTACCACTAGACCAAGATTTGCTCAAGTGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCAATATCGATCAAGACGGGTCGTGGATGTTGCAAGGGTGGAAAGGACGGATTATCGACGCATTATCATGTTGGGTTGTTGCCTAA 2097 44.02 MDNLLDDFPNSWSNNYPFHPYLSNSLFKVNRDAVDPLQIPAKSHQHQLQHHQLTNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEAEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPTADSSSCDRALGGEDESESFNGNSNSSLFHPFQNSVLSQDSFLGMQFLGHFRQGAEEASKFLPVNGRFGTIALDNDSSSSTSFPSRPVDFSWVAAENDGRSTLENGLLREKKNRLREDSDEELRSSKQSANFVDDNSLSDLFDEVLLCRGESRQSPPSCGSDESSESEANKKSRGRGKRKGKKSSRSRKQENSVEVVDLWTLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYGNRTILKLAEKVTTLHIVDFGLLYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNVDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRFLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKCVEKIVNTEYHQDFNIDQDGSWMLQGWKGRIIDALSCWVVA* 699
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21584110 21587049 + CsaV3_1G034420.1 Csa01g02434 516931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02434 698 MobiDBLite consensus disorder prediction 279 317 - -
Csa01g02434 698 PANTHER SCARECROW-LIKE PROTEIN 30 35 696 - -
Csa01g02434 698 ProSiteProfiles GRAS family profile. 317 696 IPR005202 -
Csa01g02434 698 MobiDBLite consensus disorder prediction 41 77 - -
Csa01g02434 698 MobiDBLite consensus disorder prediction 125 152 - -
Csa01g02434 698 MobiDBLite consensus disorder prediction 42 77 - -
Csa01g02434 698 Pfam GRAS domain family 328 695 IPR005202 -
Csa01g02434 698 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 35 696 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02434 Csa-Chr1:21584110 Csa07g01411 Csa-Chr7:14297157 5.15E-69 dispersed
Csa01g02434 Csa-Chr1:21584110 Csa03g03178 Csa-Chr3:29394049 0 wgd
Csa01g02434 Csa-Chr1:21584110 Csa06g01475 Csa-Chr6:12522104 5.37E-96 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30780 PF03514 GRAS 3.00E-113 CL0063 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02434 - - csv:101217374 1347.41