Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02439 ATGCTTCTTCTTCTTGGTTTATTTAGTCTCTTTATCCTCCTCCTTTGTCTCCAATGGAGCCACCCCAAACACAAACTCCTCCCACCCGGCTCCATGGGTTGGCCTTACATCGGCGAAACCTTCAAACTCTACACCCAAAACCCAAACTCCTTCTTTTCCATTAGACAAAAAAGATATGGGGATGTTTTTAAGACACATATATTGGGTTGTCCTTGTGTGATGATTTCAAGTCCAAAGGCTGCAAGAGTAGTGCTTGTGAGTAAAGCTCATTTGTTCAAGCCAACTTATCCACCAAGTAAAGAGAGAATGATCGGTCCTCAAGCTTTGTTTTTTCATCAAGGTCCTTACCATTCTTATCTCAAGAAGTTGATTCAATCTTCCTTTTTGCCATCTGCCATTAAACACTCTATTTCTCAAATTGAGAACATTGTTCTTAACCTTCTCCCCTCTTGGAATAACTCCCAAATCAACACCTTGCAACAAATGAAAAAGTTTGCTTTCGATGTGGCGATGATATCAGCTTTCGGAGATCAACAAGATTTGGAAATTGAAAGAATCAAGCATCTGTACCAATGTCTTGAAAAAGGCTACAATTCTATGCCTCTCGATCTTCCCGGAACCCCTTTCCGTAAAGCAATGAAGGCAAGGAAGGTGTTGAGTGAGACATTGGGGAAAATGATAGAGAAGAGACGGCGGAACAAAGAGCATGGAGGTGGGTTGTTGGCAGTGCTACTCAGCGGTGGTGGTGGGGAGGAAGAAGAGAAAAAGAAGCTAAGTGACTCACAAATAGCGGATAATATAATAGGAGTAATATTTGCAGCACAAGACACAACAGCAAGTGTATTAACATGGATTCTTAAATATTTACATGACAATCACCACCTTCTAGAAGCTGTTAAGAAGGAGCAAGATGCAATTTATGAAAGGAAACTGTGCGAAGGGAAGCGTGGGCTTTCATGGGATGATACTAGGCGCATGCCTTTCACTAGTCGGGTGATCTTAGAGACCCTAAGAAGAGCAAGTGTAGTGTCATTCACATTTAGAGAAGCAGTAGAAGAAGTTGAATTTGAAGGATATTTAATCCCAAAAGGATGGAAAGTTCTTCCACTCTTCAGAACCATTCATCACTCTCCTGATTTTTTCCCACATCCCCACAACTTCGATCCTTCAAGATTCGAGGAGCCACCTAGACCGAACACGTACATGCCGTTTGGCAATGGAGTGCACTCGTGTCCAGGCAGTGAGATGGCTAAGCTTGAAATGCTTGTTCTTCTCCACCACCTCACCACCACTTACAGATGGAAAGTAGTGGGAGAGGAATCTGAAATACAATACGGTCCATTTCCTGTACCAAAAGGTGGCTTACCTATTAAAGTATATCCAAGGAAGAAGAAGATTACTTCTTTGAATTGA 1413 42.11 MLLLLGLFSLFILLLCLQWSHPKHKLLPPGSMGWPYIGETFKLYTQNPNSFFSIRQKRYGDVFKTHILGCPCVMISSPKAARVVLVSKAHLFKPTYPPSKERMIGPQALFFHQGPYHSYLKKLIQSSFLPSAIKHSISQIENIVLNLLPSWNNSQINTLQQMKKFAFDVAMISAFGDQQDLEIERIKHLYQCLEKGYNSMPLDLPGTPFRKAMKARKVLSETLGKMIEKRRRNKEHGGGLLAVLLSGGGGEEEEKKKLSDSQIADNIIGVIFAAQDTTASVLTWILKYLHDNHHLLEAVKKEQDAIYERKLCEGKRGLSWDDTRRMPFTSRVILETLRRASVVSFTFREAVEEVEFEGYLIPKGWKVLPLFRTIHHSPDFFPHPHNFDPSRFEEPPRPNTYMPFGNGVHSCPGSEMAKLEMLVLLHHLTTTYRWKVVGEESEIQYGPFPVPKGGLPIKVYPRKKKITSLN* 471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21622706 21629367 + CsaV3_1G034470.1 Csa01g02439 516936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02439 470 Pfam Cytochrome P450 28 441 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 404 413 IPR017972 GO:0005506|GO:0016705
Csa01g02439 470 PRINTS P450 superfamily signature 273 290 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS P450 superfamily signature 331 342 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS P450 superfamily signature 402 411 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS P450 superfamily signature 411 422 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 Gene3D Cytochrome P450 19 461 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PANTHER CYTOCHROME P450 26 5 460 - -
Csa01g02439 470 PANTHER ABSCISIC ACID 8'-HYDROXYLASE 2 5 460 - -
Csa01g02439 470 SUPERFAMILY Cytochrome P450 23 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS E-class P450 group I signature 56 75 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS E-class P450 group I signature 262 279 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS E-class P450 group I signature 282 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS E-class P450 group I signature 330 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS E-class P450 group I signature 370 394 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS E-class P450 group I signature 401 411 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02439 470 PRINTS E-class P450 group I signature 411 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02439 Csa-Chr1:21622706 Csa04g00714 Csa-Chr4:4840262 0 dispersed
Csa01g02439 Csa-Chr1:21622706 Csa04g02406 Csa-Chr4:24307454 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02439 K09843 - csv:101216531 907.901