Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02450 ATGGAGGAGATTTGTTGTAAAGTTATGAGTGAGAGTGAGGCGTCGTCTTCTTGTGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGATGTAAATTTGTTACCAGGGTTGATCCGTCCGAGACGGAGACTGTTTCGAAACGGCAGAAGCTGGAGGATCGAGCTACGTCCATTTCTAGAGATTGTGATAACGCGGTTCAGAATTGTGATTCGGGAGAAGAAGAAACCGTTGGGAGATTTGTGGTTGGAGAGGTTTCGACCAAGGAGGTTTCGATTCCTCTGTCTAGGGAATCTTCTTGTGGGGTAGTGGTTCCGAAATTTGGATTCTCTTCTGTTTGTGGAAGGAGGAGAGAGATGGAGGATGCGGTGGCGGTTCATCCATCGCTCTGTTATACGGAGAAGAGAGCTAGTGATATGTTGCACTTCTTCGGTGTTTACGACGGCCATGGCTGTTCTCATGTGGCGATGAGGTGTAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGCTAGATAAGGATGAGAAGGAAGACGCCGCCGGTGCGGCGGAGACAGAGGCGGAGACGGCGTCGCGGTGGGACCGTACTATGAAGAGAATCTTCTGGAGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTGGTTGCGAACTGTAGATGCGAACTACAGTCGCCGGATTGCGATGCCGTTGGATCTACCGCCGTTGTCGCAATTGTGACGCCGGATAAGATCATCGTGGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGTAACGGAAAGGCCATCCCTCTCTCCTCCGATCACAAGCCGGATCGTCCCGATGAACTTAGCCGGATCGAGGAAGCCGGCGGACGAGTGATTTACTGGGACGGACCGAGAGTCCTTGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATCTGAAACCGTATGTGATATCGGAACCAGAGGTGACGATAACGAATCGTACGGCGGAGGATGAGTGTTTGATATTAGGGAGCGATGGACTATGGGATGTGGTGCCGAATGAGACGGCGTGTGGAGTGGCAAGCATGTGCTTGAGAGGGAAGGCGGAGGAGAGGTCGCCGGTGTCGCCGTCGAGTGAGGCGGAGACAGCAGCAGAAGGGGAAGAGAGAGGAAACGCCGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCTAGGCACAGTACGGACAACGTGAGCGTTGTTGTGGTGGACCTTAAGAGGGACGCTTACCCTTAG 1281 53.47 MEEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVTRVDPSETETVSKRQKLEDRATSISRDCDNAVQNCDSGEEETVGRFVVGEVSTKEVSIPLSRESSCGVVVPKFGFSSVCGRRREMEDAVAVHPSLCYTEKRASDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDKDEKEDAAGAAETEAETASRWDRTMKRIFWRMDNEVVARNNEEVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTITNRTAEDECLILGSDGLWDVVPNETACGVASMCLRGKAEERSPVSPSSEAETAAEGEERGNADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDAYP* 427
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21706055 21709021 - CsaV3_1G034580.1 Csa01g02450 516947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02450 426 PANTHER ALPHABET, ISOFORM E-RELATED 44 423 - -
Csa01g02450 426 SMART PP2C_4 100 418 IPR001932 -
Csa01g02450 426 Coils Coil 52 72 - -
Csa01g02450 426 Gene3D - 98 424 IPR036457 -
Csa01g02450 426 MobiDBLite consensus disorder prediction 365 391 - -
Csa01g02450 426 SUPERFAMILY PP2C-like 103 421 IPR036457 -
Csa01g02450 426 ProSiteProfiles PPM-type phosphatase domain profile. 110 420 IPR001932 -
Csa01g02450 426 Pfam Protein phosphatase 2C 110 376 IPR001932 -
Csa01g02450 426 PANTHER PROTEIN PHOSPHATASE 2C 37 44 423 - -
Csa01g02450 426 CDD PP2Cc 110 420 IPR001932 -
Csa01g02450 426 ProSitePatterns PPM-type phosphatase domain signature. 146 154 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02450 Csa-Chr1:21706055 Csa06g00134 Csa-Chr6:877776 1.01E-105 dispersed
Csa01g02450 Csa-Chr1:21706055 Csa01g02461 Csa-Chr1:21806317 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02450 K14497 - csv:101206871 766.148