Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02452 ATGGGGGAGGAGGAAGTGCTTATTTTGAAAACAGAACACTCGGATGAAATTAACATCCCAATAGTTGCTAAGAAGATGAATGATGTTATTCCCACTTCCACTTCCTCAGAAGTTAAATGTTGCAGTTCTGGCTGTGCTTTTTCCAGACTAGAACATAGTAATTTGGAGTCATTAAAACGTTCTAAATCAGCTATGAAGCTTGGTGGATTGATATTGTTTTATACTATAGCTATAGTAGTTGAGATTATTGGTGGTTTGAGAGCTAACAGTCTTTCGGTAATGACAGATGCAGCTCACTTGCTTAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGGGTTTCGGGTTGGGAGGCGACACCGCAACACTCGTTCGGGTATAACCGTCTTGAAGTTTTAGGTGCCCTTGTGTCTGTACAACTTATATGGCTGATTTCTGGGATATTAATCTACGAGGCGATTGACCGGATTCTTGCACCAAAGACTAAGGTGGATGGTTTCCTTATGTTTGCCGTTGCAGCTTTTGGATTCCTTCTTAACTTGTTTATGGTTATTTGGCTTGGCCATAGCCACCACCACCACCACTCTCATTCATCTCATTGTTGCCATCATGATCATCACTCTCATTCTCATCAGAATCACTTGGAGCATGAGGAGGAGGAGGTTTACACATTAACCAAACAAGAAGGTGCTTCTTTGGGATCAAAGGACAATAGTTCAACGTTGAACATAAATCTCCAAGGCGCTTATCTTCATGTCATTACTGATATGATTCAATCTATTGGTGTGATGATTGCTGGATTGGTTCTTTGGTTTAAACCCGAGTGGATCGTCGTAGATTTAATCTGCACTCTTGTATTTTCTGTTCTTGCTTTAGCTACTACTTTCTCTATGCTTAGACATACAGCTGTTATATTAATGGAAGGAACACCTAGGGAGGTCCATATTGAGAGCTTAGAAAATGACATCAAGAACATGAAAGGAGTTTATGATTTGCATGACTTGCACATTTGGTCCATAACGGTTGGAAAAGTCGTGTTGTCATGCCACGTTGTTGCTGAAGCCGGAGTTTGTTCTAGGGAGCTAATTTTGAAGATTAAAAGCCATTGTGAAAAGAGATACAATATAGTCCATACCACCATACAAGTTGAGTAA 1161 40.4 MGEEEVLILKTEHSDEINIPIVAKKMNDVIPTSTSSEVKCCSSGCAFSRLEHSNLESLKRSKSAMKLGGLILFYTIAIVVEIIGGLRANSLSVMTDAAHLLSDVAGFSVSLFAVWVSGWEATPQHSFGYNRLEVLGALVSVQLIWLISGILIYEAIDRILAPKTKVDGFLMFAVAAFGFLLNLFMVIWLGHSHHHHHSHSSHCCHHDHHSHSHQNHLEHEEEEVYTLTKQEGASLGSKDNSSTLNINLQGAYLHVITDMIQSIGVMIAGLVLWFKPEWIVVDLICTLVFSVLALATTFSMLRHTAVILMEGTPREVHIESLENDIKNMKGVYDLHDLHIWSITVGKVVLSCHVVAEAGVCSRELILKIKSHCEKRYNIVHTTIQVE* 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21718372 21720458 + CsaV3_1G034600.1 Csa01g02452 516949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02452 386 TIGRFAM CDF: cation diffusion facilitator family transporter 71 386 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa01g02452 386 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 315 386 IPR036837 -
Csa01g02452 386 PANTHER METAL TOLERANCE PROTEIN B 5 386 - -
Csa01g02452 386 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 310 IPR027469 -
Csa01g02452 386 Gene3D Cation efflux protein transmembrane domain 67 308 IPR027469 -
Csa01g02452 386 Pfam Cation efflux family 71 309 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa01g02452 386 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 5 386 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02452 Csa-Chr1:21718372 Csa01g02462 Csa-Chr1:21818584 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02452 K14689 - csv:101215692 707.597