Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02462 ATGGGGGAGGAGGAAGTGCTTATTTTGAAAACAGAACACTCGGATGAAATTAACATCCCAATAGTTGCTAAGAAGATGAATGATGTTATTCCCACTTCCACTTCCTCAGAAGTTAAATGTTGCAGTTCTGGCTGTGCTTTTTCCAGACTAGAACATAGTAATTTGGAGTCATTAAAACGTTCTAAATCAGCTATGAAGCTTGGTGGATTGATATTGTTTTATACTATAGCTATAGTAGTTGAGATTATTGGTGGTTTGAGAGCTAACAGTCTTTCGGTAATGACAGATGCAGCTCACTTGCTTAGTGATGTTGCTGGTTTCTCTGTTTCCCTCTTTGCAGTTTGGGTTTCGGGTTGGGAGGCGACACCGCAACACTCGTTCGGGTATAACCGTCTTGAAGTTTTAGGTGCCCTTGTGTCTGTACAACTTATATGGCTGATTTCTGGGATATTAATCTACGAGGCGATTGACCGGATTCTTGCACCAAAGACTAAGGTGGATGGTTTCCTTATGTTTGCCGTTGCAGCTTTTGGATTCCTTCTTAACTTGTTTATGGTTATTTGGCTTGGCCATAGCCACCACCACCACTCTCATTCATCTCATTGTTGCCATCATGATCATCACTCTCATTCTCATCAGAATCACTTGGAGCATGAGGAGGAGGAGGTTTACACATTAACCAAACAAGAAGGTGCTTCTTTGGGATCAAAGGACAATAGTTCAACGTTGAACATAAATCTCCAAGGCGCTTATCTTCATGTCATTACTGATATGATTCAATCTATTGGTGTGATGATTGCTGGATTGGTTCTTTGGTTTAAACCCGAGTGGATCGTCGTAGATTTAATCTGCACTCTTGTATTTTCTGTTCTTGCTTTAGCTACTACTTTCTCTATGCTTAGACATACAGCTGTTATATTAATGGAAGGAACACCTAGGGAGGTCCATATTGAGAGCTTAGAAAATGACATCAAGAACATGAAAGGAGTTTATGATTTGCATGACTTGCACATTTGGTCCATAACGGTTGGAAAAGTCGTGTTGTCATGCCACGTTGTTGCTGAAGCCGGAGTTTGTTCTAGGGAGCTAATTTTGAAGATTAAAAGCCATTGTGAAAAGAGATACAATATAGTCCATACCACCATACAAGTTGAGTAA 1158 40.33 MGEEEVLILKTEHSDEINIPIVAKKMNDVIPTSTSSEVKCCSSGCAFSRLEHSNLESLKRSKSAMKLGGLILFYTIAIVVEIIGGLRANSLSVMTDAAHLLSDVAGFSVSLFAVWVSGWEATPQHSFGYNRLEVLGALVSVQLIWLISGILIYEAIDRILAPKTKVDGFLMFAVAAFGFLLNLFMVIWLGHSHHHHSHSSHCCHHDHHSHSHQNHLEHEEEEVYTLTKQEGASLGSKDNSSTLNINLQGAYLHVITDMIQSIGVMIAGLVLWFKPEWIVVDLICTLVFSVLALATTFSMLRHTAVILMEGTPREVHIESLENDIKNMKGVYDLHDLHIWSITVGKVVLSCHVVAEAGVCSRELILKIKSHCEKRYNIVHTTIQVE* 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 21818584 21820256 + CsaV3_1G035690.1 Csa01g02462 516959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02462 385 SUPERFAMILY Cation efflux protein cytoplasmic domain-like 314 385 IPR036837 -
Csa01g02462 385 TIGRFAM CDF: cation diffusion facilitator family transporter 71 385 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
Csa01g02462 385 PANTHER METAL TOLERANCE PROTEIN B 5 385 - -
Csa01g02462 385 PANTHER CATION EFFLUX PROTEIN/ ZINC TRANSPORTER 5 385 - -
Csa01g02462 385 SUPERFAMILY Cation efflux protein transmembrane domain-like 68 309 IPR027469 -
Csa01g02462 385 Gene3D Cation efflux protein transmembrane domain 67 307 IPR027469 -
Csa01g02462 385 Pfam Cation efflux family 71 308 IPR002524 GO:0006812|GO:0008324|GO:0016021|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02452 Csa-Chr1:21718372 Csa01g02462 Csa-Chr1:21818584 0 dispersed
Csa01g02462 Csa-Chr1:21818584 Csa06g00677 Csa-Chr6:5544381 6.22E-106 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02462 K14689 - csv:116403740 707.983