Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02499 ATGGCTAACGACGACGTTTTCCCCTTCCTCCCTCTTTTCCTCTTTCTCATTCTCACTTACTTCATTTGGTTCCATTTCCTCGCCCGTAAACTCACCGGTCCAACCGTCTGGCCGCTCATTGGCAGCCTCCCGGCTCTCATCTCCAACCGCCGCAGCCTCCACGACTGGATCGCCGGGAACCTCCGCGCCACAGGCGGCGCTGCCACTTACCAAACTTGCACGGTAGCACTTCCCTTCATTGCTAAAAAACAAGGATTTTACACTGTCACCTGCCATCCTAGAAACATCGAGCACGTGCTTCGAACCCGGTTCGAAAATTACCCGAAAGGACCGGATTGGCAAGCGGCTTTTCACGATTTGTTAGGCCAAGGGATTTTCAATAGCGACGGAGAAATTTGGCTGATTCAACGGAAGACGGCGGCGCTTGAGTTCACCACGAGGACCCTCCGGCAAGCGATGGACCGGTGGGTGAATAGGACGATAAGGACACGGTTGTGGTGTATATTGGAGAAAGCGGCGGAGTATAAGACGGCGGTGGATTTACAGGATTTGTTACTCCGATTAACATTTGATAATATTTGTGGACTGACTTTTGGGAAAGACCCACAAACATTGTCGCCGGAGTTGCCGGCTAACCCGTTTGCTTTGGCGTTTGATACCGCCACTGAAGCCACTCTTCAGCGCCTTCTTTACCCTGGTCTTTTATGGAGGTTGGAGAAGGTTTTGGGCATTGGAATGGAAAGAAGGTTGAAGAAGAGTTTGAAAGTAGTTGAAGAATACATAAACGACGCCGTTGCAGCCCGTAATAAAGAATCTCCCTCCGACGACTTATTATCCCGCTTCATGAAGAAACGCGACGACGACCGCTTCTCCTCCGCCGTCCTCCACCGTATTGCCTTAAACTTCGTCCTCGCCGGTCGTGACACCTCTTCCGTGGCGCTCACCTGGTTCTTTTGGCTCGTAATGAACCACCCACACGTGGAGGAAAAAATCCTCTCTGAAATCTCGACCGTCCTCCGCCAGACACGTGGCGACGACATCCGCCGTTGGATCGAAGAGCCGTTGGTATTCGACGAAGCCGATAAATTGGTGTACTTAAAAGCCGCGTTGGCTGAAACGCTGCGTTTATACCCTTCCGTACCGGAGGATTTCAAGTATGTCGTGGCTGATGACGTGTTACCAGATGGTACTTTCGTGCCAGCTGGTTCGACCGTGACGTATTCGATTTATTCTGTTGGGAGGATGAAGAGTATTTGGGGGGAGGATTGTACGGAGTTTAAACCGGACCGGTGGTTGTCTCCGACCGGAGACCGATTCGAGGGGCCTAAAGATGCTTATAAGTTTGTGGCGTTTAACGCTGGACCGAGGACTTGTTTGGGCAAGGATTTAGCTTATTTGCAAATGAAGTCCGTTGCCTCGGCCGTACTCCTTCGGTATCGGCTATCTCCAGTTCCCGGCCACCGGGTGGAACAGAAAATGTCTCTTACTCTTTTTATGAAGAATGGACTTCGGGTTTATTTACATCCTCGTCGGCTCGGCTAA 1542 51.3 MANDDVFPFLPLFLFLILTYFIWFHFLARKLTGPTVWPLIGSLPALISNRRSLHDWIAGNLRATGGAATYQTCTVALPFIAKKQGFYTVTCHPRNIEHVLRTRFENYPKGPDWQAAFHDLLGQGIFNSDGEIWLIQRKTAALEFTTRTLRQAMDRWVNRTIRTRLWCILEKAAEYKTAVDLQDLLLRLTFDNICGLTFGKDPQTLSPELPANPFALAFDTATEATLQRLLYPGLLWRLEKVLGIGMERRLKKSLKVVEEYINDAVAARNKESPSDDLLSRFMKKRDDDRFSSAVLHRIALNFVLAGRDTSSVALTWFFWLVMNHPHVEEKILSEISTVLRQTRGDDIRRWIEEPLVFDEADKLVYLKAALAETLRLYPSVPEDFKYVVADDVLPDGTFVPAGSTVTYSIYSVGRMKSIWGEDCTEFKPDRWLSPTGDRFEGPKDAYKFVAFNAGPRTCLGKDLAYLQMKSVASAVLLRYRLSPVPGHRVEQKMSLTLFMKNGLRVYLHPRRLG* 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22072491 22075066 + CsaV3_1G036060.1 Csa01g02499 516996
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02499 513 PRINTS P450 superfamily signature 305 322 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PRINTS E-class P450 group I signature 294 311 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PRINTS E-class P450 group I signature 314 340 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PRINTS E-class P450 group I signature 367 385 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 Gene3D Cytochrome P450 27 512 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 SUPERFAMILY Cytochrome P450 22 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 Pfam Cytochrome P450 88 500 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02499 513 PANTHER CYTOCHROME P450 FAMILY-DEPENDENT FATTY ACID HYDROXYLASE 15 511 - -
Csa01g02499 513 PANTHER CYTOCHROME P450 15 511 - -
Csa01g02499 513 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02499 Csa-Chr1:22072491 Csa05g00271 Csa-Chr5:1665164 0 dispersed
Csa01g02499 Csa-Chr1:22072491 Csa06g00061 Csa-Chr6:403217 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02499 K15401 - csv:101214516 1026.93