Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02509 ATGGGTTTGAATGAGCCGTTGGTACTAAATGGGGATTTGGAGATCAATGAAGGTGCCGAGACGGTGGCGGTTTCTCTTCCGGTGAGGTTTGGGTTGGTTAGAGAACTGTGGAGGAATTTGGTGAAAGTGGTTTTTGGAACAAAGCTTGCTGTGCTTTTTCCGGCCATCCCTTTGGCTGTGGCGGCGGATTTTTATAGCTTTGGAAGAACATGGATATTTGGTTTGAGCTTACTCGGATTGGCTCCACTTGCTGAACGTGTTAGCTTTTTGACAGAGCAGATTGCATGCTACACAGGGCACACAGTTGGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATGTTTGCTCTTCATCAAAACAAAGTCAATGTCTTGAAGTTCTCTCTTTTGGGTTCTATTCTTTCCAATTTGCTTCTTGTTCTTGGGACTTCCTTGCTTTTTGGTGGCTTATCCAATCTCAACAAGCAACAGACTTTCAACCTAAAAGTGGCCAATGTGAGCTGTGTGTTGTTGTTGTTGGGATTGCTATGCCAAACGTTACCATTGATGTTTACATTTGCATCACCCACAATGATGATCTCAACAAACGTTTATGTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTAACTGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGAAGAGGATGAAGAAGAAGAAGAAGAAGAAAGGGCAGTGGTTGGTATTTGGAGTTCAATTGCTTGGTTGGTTGGTATGACCATACTCATATCTATTTTATCACAATACATTGTTGCAACAATTGAGGATGCATCAAAATCATGGGGAGTATCAATGAGCTTTGTAAGCATAATTTTGGTACCAATTATGGGGAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATAACACTAGGAATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCATTGAGTGTGATTGTTGGATGGTGTATGGGCATCAAAATGGATCTTGATTTTGGTATCATTGAAACTTCTTCTCTTGCCTTCACCATCATCTTAACTATCTTCACCTTACAGGATGGAAGTTCAAATTACATCAAAGGATTGGTACTTGTCCTAAGTTATGTAGCAATTTCTTCCTGTTTTTTTTGTTCATAA 1215 40.41 MGLNEPLVLNGDLEINEGAETVAVSLPVRFGLVRELWRNLVKVVFGTKLAVLFPAIPLAVAADFYSFGRTWIFGLSLLGLAPLAERVSFLTEQIACYTGHTVGGLVNATCGNATELIIAMFALHQNKVNVLKFSLLGSILSNLLLVLGTSLLFGGLSNLNKQQTFNLKVANVSCVLLLLGLLCQTLPLMFTFASPTMMISTNVYVLQLSRTCSLLMLTAYIAYVFFQLKTHHQFFGLPQEEEDEEEEEEERAVVGIWSSIAWLVGMTILISILSQYIVATIEDASKSWGVSMSFVSIILVPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIVGWCMGIKMDLDFGIIETSSLAFTIILTIFTLQDGSSNYIKGLVLVLSYVAISSCFFCS* 405
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22143541 22147380 - CsaV3_1G036160.1 Csa01g02509 517006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02509 404 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 21 403 IPR004713 GO:0006812|GO:0008324|GO:0016021
Csa01g02509 404 TIGRFAM caca2: calcium/proton exchanger 35 402 - -
Csa01g02509 404 TIGRFAM cax: calcium/proton exchanger 54 402 IPR004798 GO:0006816|GO:0015369
Csa01g02509 404 Pfam Sodium/calcium exchanger protein 70 228 IPR004837 GO:0016021|GO:0055085
Csa01g02509 404 Pfam Sodium/calcium exchanger protein 259 396 IPR004837 GO:0016021|GO:0055085
Csa01g02509 404 PANTHER VACUOLAR CATION/PROTON EXCHANGER 21 403 - -
Csa01g02509 404 Gene3D - 99 241 IPR044880 -
Csa01g02509 404 Gene3D - 251 401 IPR044880 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02509 Csa-Chr1:22143541 Csa03g03075 Csa-Chr3:28931882 7.47E-135 dispersed
Csa01g02509 Csa-Chr1:22143541 Csa04g01618 Csa-Chr4:15535808 2.58E-146 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02509 K07300 - csv:105436053 719.924