Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02526 ATGTCTCTCTCTCTTGCGGTTTCCAATTCGCCCGTATTTTCCCCTTCATCCATGTTCTGCAATAAGGCGTCCATCATTTCTCCCGCGCCGGAGGCGTTGACGCTCACTTTAGCTCATTTGAAGTCATCTCAGGCTTCTTCCTCTTGCTCTTCTTCTTCTCCTTCTTCTCCTTCTTCCCCTTTCCGCATTCGCTTTCCGAAGCCTCCTTCTGGGCTTTCGGCAGCGGCCGCAGCGGTGGCGTTGGCTTCGACTTCTTCTCCTTCCTCCTCCTCGTCCAGCGCGATCTTGAAAAGGAAGAGACCCGCTAGGTTGGATATTCCGTTGACACCGTTAAGTTTTGGAGCTCCGGTGATGCCTTCGCCGTCCTCGTATAGGGAGGTGGTGGAAGCCGAGAGAGATGGGTATTCTGTGTATTGTAAGAGAGGTAGGAGGAGAATTGCTATGGAAGATCGGTATTCTGCTGCTGTTGATATTGATGGAAATTCTAAAGAGGCGTTTTTTGGTGTATTTGATGGACATGGAGGTGCAAAGGCAGCTGAATTTGCGGCAAATAACTTAGAGAAGAATGTTTTGAATGAAATTGAGAGAATGGATGATAATGAAACTGATTTTGAACAAGCTATTAAACATGGCTACCTCACCACAGATTCTGATTTCCTCAAGGAGGATCAACGTGGTGGTTCTTGTTGTGTGACAGCCCTTATCAAGAAAGGAAACCTTGTTATTTCCAACGCCGGTGATTGTCGTGCCGTTCTCAGCAGCCAAGGTGTTGCCGAGGCCATCACTTCCGACCACCGCCCATCCCGGGAAGACGAAAGGCACAGGATCGAGTCCACGGGTGGATATGTTGATTTGTGCAATGGAATTTGGAGAGTCCAGGGATCTCTGGCTGTAACAAGAGGAATTGGAGATGCTCACCTCAAACAATGGGTGATAGCCGAACCGGAGACAAGGGCAATTCGTATCGAGCCACGACACGAGTTCTTGATCTTGGCCTCAGACGGATTATGGGAAACGGTGAGCAATCAAGAAGCAGTTGACATTGCACATCCATTGTGTGTAGGAATGGAGAAGGCAGAGCCATTAACGGCTTGTAGAAAGCTTGTGGAGCTTTCACTTTCAAGAGGTTCAGTTGATGACATTAGTGTAGTACTAATCCAATTGGCTAACTTCATCTAA 1179 48.09 MSLSLAVSNSPVFSPSSMFCNKASIISPAPEALTLTLAHLKSSQASSSCSSSSPSSPSSPFRIRFPKPPSGLSAAAAAVALASTSSPSSSSSSAILKRKRPARLDIPLTPLSFGAPVMPSPSSYREVVEAERDGYSVYCKRGRRRIAMEDRYSAAVDIDGNSKEAFFGVFDGHGGAKAAEFAANNLEKNVLNEIERMDDNETDFEQAIKHGYLTTDSDFLKEDQRGGSCCVTALIKKGNLVISNAGDCRAVLSSQGVAEAITSDHRPSREDERHRIESTGGYVDLCNGIWRVQGSLAVTRGIGDAHLKQWVIAEPETRAIRIEPRHEFLILASDGLWETVSNQEAVDIAHPLCVGMEKAEPLTACRKLVELSLSRGSVDDISVVLIQLANFI* 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22272510 22274894 + CsaV3_1G036330.1 Csa01g02526 517023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02526 392 ProSiteProfiles PPM-type phosphatase domain profile. 134 388 IPR001932 -
Csa01g02526 392 MobiDBLite consensus disorder prediction 45 64 - -
Csa01g02526 392 MobiDBLite consensus disorder prediction 45 60 - -
Csa01g02526 392 Pfam Protein phosphatase 2C 141 381 IPR001932 -
Csa01g02526 392 PANTHER PROTEIN PHOSPHATASE 2C 3 391 IPR015655 GO:0004722|GO:0006470
Csa01g02526 392 Coils Coil 183 203 - -
Csa01g02526 392 SMART PP2C_SIG_2 153 388 IPR001932 -
Csa01g02526 392 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED 3 391 - -
Csa01g02526 392 SMART PP2C_4 127 386 IPR001932 -
Csa01g02526 392 SUPERFAMILY PP2C-like 133 389 IPR036457 -
Csa01g02526 392 ProSitePatterns PPM-type phosphatase domain signature. 166 174 IPR000222 GO:0043169
Csa01g02526 392 CDD PP2Cc 134 388 IPR001932 -
Csa01g02526 392 Gene3D - 135 391 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02526 Csa-Chr1:22272510 Csa05g00829 Csa-Chr5:6160066 6.11E-117 dispersed
Csa01g02526 Csa-Chr1:22272510 Csa03g02203 Csa-Chr3:19119262 1.66E-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02526 K17506 - csv:101207841 692.96