Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02527 ATGCTCAAAACCACCGCGCTTTCTTGGACTCGAAGTAATTCTCCCATCGGAAAAGGCTCCTTTGCCACCGTCTCTCTCGGAATTCGAAAACCCGACGCTCGGATTTTCGCCGTCAAATCTGTCCAGCAGACTCAGACACTCCGCCCACAAATCGACTGCTTAGAGAATGAAATTCGAATCCTCCGATCCTTGAACTCGCCTTACGTGGTTGCCTTTCTCGGCGATGATGTTTCCCATGAATCTCCCACCACCTCCTTTCGTAACCTTCATATGGAGTATTTGCCAGGTGGCACCGCAGCAGATGACCCCACTGGCACTCGCGATGATAAGCTTTTACGGGAGAGGACATGGTGCCTCGTTTCGGCTTTGAGTTACATTCATTCCAAAGGAATTGTTCACTGTGATGTTAAAGGGAGGAACGTTTTGATCGGATTGAATCCCGGGTTTCTGAAATTGGCTGATTTCGGCTCTGCAATTGAACTTCACGGCCCCGGCCACAGGTCTCGGGATTCGCTTGCGCCACGTGGGAGTCCACTATGGATGGCGCCAGAGGTAGTCCGCGGAGAATTTCAGGGCCCGGAATCGGACGTTTGGTCCCTTGGGTGCACGGTCATTGAAATGGTCACCGGGAAACCCGCATGGGAAGATTTCGGAGCCGATACGCTCAGTCGAATCGGCTTTTCCGACGATTTGCCAGACTTTCCAACATGCTTATCGGAAGTCTGCCGGGATTTTCTTCGGAAGTGTCTCAGAAGAAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCGGCGGCGGCGGCCTCGCCGAAGATTGCTGTAGAGAATTCCCCCAGGTGCGTTCTTGACTGGGTCAACGTCAGTTTCTCCGACGACGAGGAGGAAATTCCACACGCCGACGAAGCCTCCGGATCCGGCGGCCAGGAAAATGAGATATATGGTAAGGAAAGAATTGGGAAATTGAGTACTACGAGTGAATGGCCAAATTGGGAATCAGACGGTTGGTCGGCGGTGAGAAGTAGTTACAGTGAAGCGGCGGCGGAGACAGAGGCGAGCTGCCGGAAAGAAGAAGAAGAAGAAGAAGGCGGAGGGGCAGAATGGGAATGTGGAAATTTGAGAAGGGTAGAAGGGGAAATGGAAGGGAGAAGTTGGGAATATTCGGAGTTTGTAAGAAGAGACAATCACGGAAAATTGGGGGCCGAATATTCAAATCCTGGCGGTATGATCATTCCGGAGCGGCCACGTAATAATTTCGGCGGTGGTGGCGGTTGCGGTAGCGGTGGATTAAGTTTCCGGCGGTTGGGATATGAAATATCTGAAATTACAACAATAATAACCTCATGGATATACTCAATTGAATTGATATTATGTTGTTACTATTGGAATATATTAATGAAGAAATTGGTGTTATTTGGGAATTACACTTTCTTACCTTTCTTTTCTGCCTAA 1476 50.2 MLKTTALSWTRSNSPIGKGSFATVSLGIRKPDARIFAVKSVQQTQTLRPQIDCLENEIRILRSLNSPYVVAFLGDDVSHESPTTSFRNLHMEYLPGGTAADDPTGTRDDKLLRERTWCLVSALSYIHSKGIVHCDVKGRNVLIGLNPGFLKLADFGSAIELHGPGHRSRDSLAPRGSPLWMAPEVVRGEFQGPESDVWSLGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPDFPTCLSEVCRDFLRKCLRRNPSERWSCDRLLQHPFLAAAAAAAASPKIAVENSPRCVLDWVNVSFSDDEEEIPHADEASGSGGQENEIYGKERIGKLSTTSEWPNWESDGWSAVRSSYSEAAAETEASCRKEEEEEEGGGAEWECGNLRRVEGEMEGRSWEYSEFVRRDNHGKLGAEYSNPGGMIIPERPRNNFGGGGGCGSGGLSFRRLGYEISEITTIITSWIYSIELILCCYYWNILMKKLVLFGNYTFLPFFSA* 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22285116 22287203 + CsaV3_1G036340.1 Csa01g02527 517024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02527 491 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 371 - -
Csa01g02527 491 SMART serkin_6 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02527 491 CDD STKc_MAPKKK 8 269 - -
Csa01g02527 491 SUPERFAMILY Protein kinase-like (PK-like) 14 279 IPR011009 -
Csa01g02527 491 Pfam Protein kinase domain 13 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02527 491 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Csa01g02527 491 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 14 5 371 - -
Csa01g02527 491 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02527 491 Gene3D Transferase(Phosphotransferase) domain 1 4 312 - -
Csa01g02527 491 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02527 Csa-Chr1:22285116 Csa07g00349 Csa-Chr7:2582930 1.63E-63 dispersed
Csa01g02527 Csa-Chr1:22285116 Csa02g02662 Csa-Chr2:23201960 2.71E-67 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77832 PF00069 Pkinase 9.60E-52 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02527 - - csv:101203251 963.755