Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02530 ATGATTTATTCAGCAGCCATGAACAACCCATCACAGGAAAGTGTTGAAACTGAAGGCATCTCTCCAAAGGTGAAGAATGGTTCGTACAGAAGTGTGCTTATGTTGGCTTATCAAAGTTTAGGAGTTGTTTATGGGGACCTCAGCACCTCCCCTCTTTATGTCTACAAAACTACCTTCTCTGGGAAATTGAGTCTCCATGAGAATGATGAAGAAATTTATGGGGTTCTATCCTTTATCTTCTGGACATTTACTCTCATTGCTCTCTTCAAATACGTTTTCATTGTCATGTCAGCCGATGATAACGGTGAAGGGGGTACCTTTGCATTGTACTCTCTTCTTTGCCGTCATGCTAGATTATGCATTCTGCCGAATCAAGAGCCTATCGATGATCAATTATCTGCATATGACATTAAGGGGATCTCGGAGACAAGGTCGAGTGCTGCTCTGAAGTCCTTTTTTCGACTGCATCCATCTTTTCGAAGAGGTTTTTTGTTGTTTGTTCTCTTTGGAACCTGCATGGCTATTGGTGATGGAGTGCTCACTCCTGCAATATCAGTTCTTTCAGCAGTCTCGGGAGTCAAACATAAGATCACTGGACTCCATGATAACTATATTGTTTTAATCTCATGCGTCCTCTTGGTTGGACTGTTCTCCCTCCAGCATCGTGGAACACACAAAGTTGCTTTCATGTTTGCTCCAATCATTACGGCGTGGCTTGTCTGTATTAGCGTTATTGGAATGTATAATATCATCAAATGGAACCCAAGTATATATCACGCACTCTCTCCCGTTTATATGCTAAAATTCCTTCGAAGCACAGGTGTTGAAGGTTGGATTTCATTAGGCGGAGTCGTTCTCTCAATTACAGGTGTGGAGGCAATGTTTGCTGATTTAGGCCATTTCTCTTCACTTTCAATCAAGATTGCCTTCACACTTTTTGTATATCCCTCCTTGATACTCGCTTATTTGGGTGAGGCTGCATTCCTCTCTAAACACCATGAAGATATTCAGAGAAGCTTCTACAGAGCAATACCTGAAGCTGTGTTTTGGCCGGTGTTTGTCGTGGCCACTTTTGCTTCTGTCATAGGAAGTCAGGCTGTGATTTCGGCTACATTCTCCCTTGTAAACCAGTGTTGTGCTCTGAATTGTTTCCCTCATGTGAAAACTATGCACACCTCAAACCAGATATATGGGCAGATTTATATCCCAGAAGTTAATTGGATGTTAATGTGCCTTTGTTTAGCTGTGACAATTGGCTTGAGAGACACAAGCATGATAGGCCATGCATATGGGCTGGCAGTCACCTTTGTCATGTTTGTCTCAACTTGCTTGATGACACTTGTGATTATAATTGTTTGGAAGCTGAGGTTGATCAATGCTATAGCGTTTTTGATGTTTTTCGGGTCGATCGAACTTCTTTACATCTCTGCATCAATCATCAAAGTTCATGAAGGTGGTTGGATCCCTCTCGTGCTTTCTACAATCTTTATGTGTTCGATGTATGCATGGTACTATGGAACGATGAAGAAACACGAATACGACGATGAGAACAAAGTGTCAATGAATAGGATTCTTTCTTCGGGGCCTAGTCTCGGCATAGTGCGTGTGCCTGGAATTGGACTCATATACACTAATCTGGTTGCTGGTGTTCCTGCTGTTTTTGGTCACTTTGTAACCACTTTGCCAGCATTTCATCAAGTGCTTGTATTCGTTTGTATAAAATATGTTCAAGTTCCCCATATCAATGAAGAAGATCGTTTGCTTGTCACGAGGGTGGGTCCAAAAGAATGCAGCATGTTTCGGTGCATTGTCCGATACGGTTACAGAGATTTACTGCAAGAAAACTACAATTTCGAGAACAGATTAGTGTTTTCTTTAGTGCATTATGTAGAAACAGAAGATCAGTTTTGGAAGAAACCAATGACAGAAGTGTCTAGAGGGTGTGAAAATTCAAAAGAACCTTGTGAATATGAATTACCATTGGAGCAAGCTTTTAGAAGCTCAAACAAATATCAAGCAATGGATACCGCAGACGATGATCGGGGAAAGTCTATACATAATGAGGAAGCAATGGAAATATTGAGAGGAAAAGAATCAGGAATCACGTACATCTTTGGACATTGCTCGGTCAAGGCCAAGAAATCATCTTCCATCTTCAAGAAGTTAGCCATTGATATTATATATGCTTTCTTGAACCAGAATTGTAGAGAGCAAGAGGTTTTACTAAATGTGCCTCACACTTCTCTATTGGAAGTTGGGATGGTATATTATGTATAG 2277 41.02 MIYSAAMNNPSQESVETEGISPKVKNGSYRSVLMLAYQSLGVVYGDLSTSPLYVYKTTFSGKLSLHENDEEIYGVLSFIFWTFTLIALFKYVFIVMSADDNGEGGTFALYSLLCRHARLCILPNQEPIDDQLSAYDIKGISETRSSAALKSFFRLHPSFRRGFLLFVLFGTCMAIGDGVLTPAISVLSAVSGVKHKITGLHDNYIVLISCVLLVGLFSLQHRGTHKVAFMFAPIITAWLVCISVIGMYNIIKWNPSIYHALSPVYMLKFLRSTGVEGWISLGGVVLSITGVEAMFADLGHFSSLSIKIAFTLFVYPSLILAYLGEAAFLSKHHEDIQRSFYRAIPEAVFWPVFVVATFASVIGSQAVISATFSLVNQCCALNCFPHVKTMHTSNQIYGQIYIPEVNWMLMCLCLAVTIGLRDTSMIGHAYGLAVTFVMFVSTCLMTLVIIIVWKLRLINAIAFLMFFGSIELLYISASIIKVHEGGWIPLVLSTIFMCSMYAWYYGTMKKHEYDDENKVSMNRILSSGPSLGIVRVPGIGLIYTNLVAGVPAVFGHFVTTLPAFHQVLVFVCIKYVQVPHINEEDRLLVTRVGPKECSMFRCIVRYGYRDLLQENYNFENRLVFSLVHYVETEDQFWKKPMTEVSRGCENSKEPCEYELPLEQAFRSSNKYQAMDTADDDRGKSIHNEEAMEILRGKESGITYIFGHCSVKAKKSSSIFKKLAIDIIYAFLNQNCREQEVLLNVPHTSLLEVGMVYYV* 759
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22301381 22308812 + CsaV3_1G036370.1 Csa01g02530 517027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02530 758 TIGRFAM kup: potassium uptake protein 35 758 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa01g02530 758 Pfam K+ potassium transporter 37 610 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa01g02530 758 PANTHER POTASSIUM TRANSPORTER 22 649 - -
Csa01g02530 758 PANTHER POTASSIUM TRANSPORTER 685 758 - -
Csa01g02530 758 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 22 649 IPR003855 GO:0015079|GO:0016020|GO:0071805
Csa01g02530 758 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 685 758 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02530 Csa-Chr1:22301381 Csa03g01999 Csa-Chr3:15871980 0 dispersed
Csa01g02530 Csa-Chr1:22301381 Csa03g03914 Csa-Chr3:34316948 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02530 K03549 - csv:101222845 1501.49