Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02554 ATGTCCACCACCCAGAATCCTGAACTTGTTTGTGTCACCGGCGCCAGTGGCTGTATCGGATCCTGGCTCGTTCACCTCCTTCTCCTCCGCGGCTACTCCGTCCACGCCACAGTTCAAAATATCAAGGATGAGGCTGAAACCAAGCATCTGCAGGATTTAGAAGGAGCGGATGCTCGTCTTCGTCTCTTCCAAATCGACCTTCTCGATTATGATTCCATTGTCCCCGCCGTCACTGGTTGTGCTGGTGTCTTCCACGTTGCGTCTCCTTGCATTGTTGATGCTGTTCAGGATCCTCAGAGGGATTTATTGGATCCGGCTATCAAAGGAACCATCAATGTCCTGACGGCGGCTAAGGAGGCTGGTGTACGACGTGTAGTGGTGACTTCTTCTATCTCCGCCATGATTCCGAACCCTAACTGGCCGGCGAATGTTGTAAGGAATGAAGAAAGCTGGACCGATGTTGATTACTGCAAGCAAAAAGGGCTGTGGTATTCAATTTCAAAAACTCTAGCAGAAAAGGCTGCTTGGGATTTTGCCAAGGAGAAAGGATTGGATGTGGTGGTGATTAATCCAGGCACAGTCATGGGCCCTGTGTTTCCTCCCAGAATCAATGCAAGCATGCAAATGCTTTTAAAACTTCTCGAGGGGTGCAGTGAGACATACGGGGATGTGTTTATCGGAGTAGTGCACTTTAAAGATGTTGCATTAGCACACATTTTGGTGTATGAAAACAAATCAGCTACAGGAAGACACCTTTGTGCCGAGTCCATAGCTCGTTACTCTGACTATGTAGCGAAGGCTGCTGAACTCTTTCCTCAGTACAAGGTGCCCAGATCGATAGAAGATTCACAGCCTGATTTGGTGAGAGCAAAAGATGGAGCTAAGAAGTTGATGAACCTGGGGTTGGAATTCATTCCAATGGAACAAATTCTCAAGGACGCCGTTGAGGATCTAAAAAAGAAGGGATATATTTCCTGA 978 47.65 MSTTQNPELVCVTGASGCIGSWLVHLLLLRGYSVHATVQNIKDEAETKHLQDLEGADARLRLFQIDLLDYDSIVPAVTGCAGVFHVASPCIVDAVQDPQRDLLDPAIKGTINVLTAAKEAGVRRVVVTSSISAMIPNPNWPANVVRNEESWTDVDYCKQKGLWYSISKTLAEKAAWDFAKEKGLDVVVINPGTVMGPVFPPRINASMQMLLKLLEGCSETYGDVFIGVVHFKDVALAHILVYENKSATGRHLCAESIARYSDYVAKAAELFPQYKVPRSIEDSQPDLVRAKDGAKKLMNLGLEFIPMEQILKDAVEDLKKKGYIS* 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22473929 22477559 - CsaV3_1G036610.1 Csa01g02554 517051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02554 325 CDD FR_SDR_e 10 302 - -
Csa01g02554 325 PANTHER CINNAMOYL-COA REDUCTASE-LIKE PROTEIN 8 316 - -
Csa01g02554 325 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 319 IPR036291 -
Csa01g02554 325 Gene3D - 2 325 - -
Csa01g02554 325 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 8 316 - -
Csa01g02554 325 Pfam NAD dependent epimerase/dehydratase family 10 249 IPR001509 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02554 Csa-Chr1:22473929 Csa03g02979 Csa-Chr3:28400056 2.53E-97 dispersed
Csa01g02554 Csa-Chr1:22473929 Csa03g02977 Csa-Chr3:28388659 3.21E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02554 - - csv:101204420 652.514