Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02575 ATGGACGGCGGGGGTGTGAGGTTGAAGGCGGCGAGTTCGAGCAATGGTGGAAGAACCCGCGTGGGAAAATACGAATTGGGTAAAACCCTTGGGGAGGGTAACTTTGCCAAGGTTAAGTTTGCTCGGAATTCAGAGACCGGGGAGAACGTGGCGATCAAAATTCTTGATAAGGAGAAAGTTCTTAAGCATAAGATGATCAGTCAGATTAAACGTGAGATATCAACCATGAAATTAATTAGGCATCCAAATGTCATCCGTATGATTGAGGTGATGGCTAGCAAGACCAAAATATATATTGTGTTGGAGTTTGTCACTGGTGGGGAACTATTTGACAAGATTGTTAGTAGAGGCAGGATGAAGGAAGATGAAACAAGAAAGTATTTTCAGCAACTTATTAATGCTGTGGATTATTGTCATAGCAGAGGTGTTTTTCACAGAGATCTAAAGCCGGAGAATTTGCTGCTTGATGCTAATGGCGTTCTTAAAGTTTCAGATTTTGGTTTGAGTGCACTGCCTCAGCAAGTTCGGGAAGATGGATTACTGCACACAACATGTGGGACTCCAAATTATGTTGCTCCGGAGGTGATCAATAATAAAGGCTATGACGGCGCAAAGGCTGACTTGTGGTCATGTGGTGTAATTCTTTTTGTTTTGATGGCTGGTTATCTACCCTTTGAAGATTCCAACCTGGTTGCGTTGTACAAGAAGATACACAAGGCTGACTTCACTTGTCCACCATGGTTCTCTACTAACGCAAAGAAACTTATCAAAAGAATTCTGGATCCCAATCCCTCAACGAGAATTACTATTCCAGAGGTAATTGAGAATGAATGGTTTAGAAAAGGTTACAAGCCGCCTACTTTTGAACAAGCTGATATAAGTCTTGATGATGTGGACGCTATCTTCAACGAAACAGGGGATTCGGGTAGTCTTGTTGTGGAAAGGAAAGAGGAAGGATCTAAATCCCCTCTTACGATGAACGCATTTGAGCTTATATCTAAATCTCAAGGACTCAACCTCAGTTCTCTTTTTGAGAAACAAATGGGAATTGTTAAACGGGAAACAAGGTTCACATCCAATCGACCTGCGAAAGAGATCCTTTCAAAAATTGAGGAAACTGCATTGCCTTTGGGTTTTGATGTGAAGAAAAACAACTACAAGATGAAACTTCAAGGTGAAAAAACAGGTCGTAAAGGCCATTTATCAGTGGCAACAGAGATTTATGAGGTTGCTCCATCACTGTACATGGTTGAGCTCCGCAAGGCTGGAGGAGATACATTAGAATTTCACAAGTTTTATAAGAGTCTCAAGACTGGGCTGAAAGATATTGTCTGGAGACATGAAGAGGATCTGGATGGAGATACTGGTGCTAGTGTCTCACAGTCGTCAAGGTAA 1395 41.86 MDGGGVRLKAASSSNGGRTRVGKYELGKTLGEGNFAKVKFARNSETGENVAIKILDKEKVLKHKMISQIKREISTMKLIRHPNVIRMIEVMASKTKIYIVLEFVTGGELFDKIVSRGRMKEDETRKYFQQLINAVDYCHSRGVFHRDLKPENLLLDANGVLKVSDFGLSALPQQVREDGLLHTTCGTPNYVAPEVINNKGYDGAKADLWSCGVILFVLMAGYLPFEDSNLVALYKKIHKADFTCPPWFSTNAKKLIKRILDPNPSTRITIPEVIENEWFRKGYKPPTFEQADISLDDVDAIFNETGDSGSLVVERKEEGSKSPLTMNAFELISKSQGLNLSSLFEKQMGIVKRETRFTSNRPAKEILSKIEETALPLGFDVKKNNYKMKLQGEKTGRKGHLSVATEIYEVAPSLYMVELRKAGGDTLEFHKFYKSLKTGLKDIVWRHEEDLDGDTGASVSQSSR* 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22662732 22671135 + CsaV3_1G036820.1 Csa01g02575 517072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02575 464 PANTHER SERINE/THREONINE KINASE 18 451 - -
Csa01g02575 464 SUPERFAMILY Protein kinase-like (PK-like) 21 290 IPR011009 -
Csa01g02575 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 143 155 IPR008271 GO:0004672|GO:0006468
Csa01g02575 464 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02575 464 Gene3D Phosphorylase Kinase; domain 1 13 103 - -
Csa01g02575 464 ProSitePatterns Protein kinases ATP-binding region signature. 30 53 IPR017441 GO:0005524
Csa01g02575 464 ProSiteProfiles NAF domain profile. 321 345 IPR018451 GO:0007165
Csa01g02575 464 Gene3D Kinase associated domain 1, KA1 320 446 - -
Csa01g02575 464 SMART serkin_6 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02575 464 Pfam NAF domain 323 383 IPR004041 GO:0007165
Csa01g02575 464 Gene3D Transferase(Phosphotransferase) domain 1 104 286 - -
Csa01g02575 464 CDD STKc_SnRK3 23 278 - -
Csa01g02575 464 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 18 451 - -
Csa01g02575 464 CDD CIPK_C 327 442 - -
Csa01g02575 464 ProSiteProfiles Protein kinase domain profile. 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02575 Csa06g03811 CCT
Csa01g02575 Csa06g01609 CCT
Csa01g02575 Csa06g01609 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02575 Csa-Chr1:22662732 Csa06g03811 Csa-Chr6:30243812 0 dispersed
Csa03g04537 Csa-Chr3:39549126 Csa01g02575 Csa-Chr1:22662732 1.98E-51 dispersed
Csa06g00023 Csa-Chr6:151726 Csa01g02575 Csa-Chr1:22662732 1.99E-149 dispersed
Csa01g02575 Csa-Chr1:22662732 Csa01g02318 Csa-Chr1:20282952 1.54E-172 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77833 PF00069 Pkinase 6.70E-75 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02575 - - csv:101222334 924.85