Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02582 ATGAGGCTCTCTGCGGGTGGTTTTAGTCCTCAGGCTCCGGAAGGCGAGAGAAGGGTCCTGAATTCCGAGCTTTGGCATGCGTGCGCTGGTCCTCTTGTTTCTCTGCCGGCTGTTGGCAGTCGTGTTGTTTATTTTCCACAAGGCCACAGTGAGCAGGTTGCTGCATCTACCAATAGAGAGGTTGATGCCCAGATTCCGAATTACCCAAGTTTGCCGCCGCAGCTCATTTGTCAGCTTCACAACCTGACAATGCATGCAGATGCCGAGACAGATGAAGTATATGCTCAGATGACTCTGCAACCCTTGAGTGCTCAAGAATTAAAGGAAGCCTACCTTCCAGCTGAGTTGGGCACTCCAAGTAGGCAGCCAACGAATTACTTTTGCAAAACTTTGACAGCAAGTGATACCAGCACACATGGAGGTTTCTCTGTTCCTCGCCGTGCTGCTGAAAAAGTATTCCCTCCTTTGGACTTCTCTATGCAGCCCCCAGCCCAAGAGCTGATTGCGAGGGACTTGCATGATAATGAGTGGAAATTTAGACATATATTTCGCGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTCGTGAGTGCTAAAAGACTTGTTGCTGGCGACGCTGTACTTTTTATCTGGAATGAGAAGAACCAATTACTCCTTGGAATTAGGCGTGCTAGTCGACCACAAACGGTGATGCCTTCATCCGTGCTGTCAAGTGATAGCATGCATCTAGGGCTTCTTGCTGCAGCAGCTCATGCAGCAGCTACCATCAGTCGGTTTACAATATTTTTTAACCCAAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTTGGCATGCGCTTTAGGATGCTGTTTGAAACGGAAGAATCAAGTGTTCGTCGCTACATGGGCACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAACTCACATTGGCGCTCGGTCAAGGTTGGCTGGGATGAGTCGACAGCTGGAGAGCGACAGCCGAGAGTGTCTTTGTGGGAAATTGAACCACTAACAACGTTTCCAATGTATCCATCACCGTTTCCACTTAGGCTGAAGCGACCCTGGCCAACTGGACTGCCTTCTTTTGGCATCAAGGATAGTGACCTTGGAATGAATTCTCCATTCATGTGGCTACGGGGAGATAATAGTGATCGCGGCATCCAGTGTCTAAACTTTCAGGGAGCTGGGGTCTCACCATGGATGCAGCCAAGGCTTGATCCATCCATGATGGGTATGCAATCTGACATGTATCAAGTCATGGCTACTGCAGCTCTTCAGGAGATGAGGGCAATTGATTATTCCAAAATATCACCTGCATCTGTTCTTCAATTCCAGCAGCCCCAAAGCCTTCCTTGTCAGTCTTCTACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAACCTCAGCAGGCGTTTCTACAATCCGTACAAGAAAACCAGCAGCATTCGCAGCCGCAGTCTCAAACTCAGTCGCATCATCTTCAGCCGCAATTGCCCCAGCAATCATTCAATAATCATTCACAGCAACATCAACAGCAACCAAGGCAGACCCAACCACTCGATCATCAGCAGATTCCTTCTTCTATCCCTGCTATATCTCAGTTTGCTTCATGTTCTCAATCCCAGTCACCGTCCTTGCAAACTGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCTGATTCCAATGGTAACCCTGCAACTAGTCCTACTGTTTCCCCATTGCATAGCCTTGCAGGTTCGTTTGTGCAAGATGACTCTTCTCAGCTGCTTAACCTTCAAAGAGCACATTCAGTAATTCCTTCAGCTGGTTGGCCATCAAAGAGAGCTGCTATCGATCCTCTCTGTACTGGAGCTTCTCAATATTTTCTACCTCAAGTTGAAATGTTAGGAACACAACAGAGTAGTATTTCTCAGAATACTGTTGCATTGCCACCCTTCCCTGGAAGGGAATGTCCTATTGATGACAGAGAAGAGAGTTCTGATCCTCAAAACCATGTTTTATTTGGTGTGAATATAGATTCTTCATCCCTTCTAATGCAAAATGGGATGTCAACCCTTAGGGGAGTTTGCAATGATAGTGTTTCTACAACTCTACCTTTTTCTTCCAATTATATGAGCACTGCTGGTACCAATTTTCCTGTAAATCCAACTATGACATCCTCGAATTGCATCGATGAATCGGGTCTCCTGCAGTCTCATGAAAATGTGGGCCAAGTAAACCCACCCAACGGAACCTTTGTCAAGGTTCACAAATCGGGGACCTACAGTAGGTCGTTAGACATAACCAAATTCAACAGCTATCCTGAGCTACGCAGCGAGCTTGCTCGCATGTTTGGCTTAGAAGGCGAGTTGGAAGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGACGTTCTTCTTCTTGGTGATGGCCCGTGGCCGGAGTTTGTAAACAGTGTGTGGTGCATCAAAATACTTTCACCAGAAGAAGTTCAGGACATGGGAAAACGAGGTTTAGAACTTCTGAACTCTGTGCCAATTCAGAGGCTTTCCAACAGCACCTGCGACGACTATGGCAGTCGACAGGACTCAAGAAATTTGATTTCAGGGATAGCCTCTGTCGGGCCTCTTGACTACTGA 2700 47.11 MRLSAGGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAASTNREVDAQIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATISRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPTGLPSFGIKDSDLGMNSPFMWLRGDNSDRGIQCLNFQGAGVSPWMQPRLDPSMMGMQSDMYQVMATAALQEMRAIDYSKISPASVLQFQQPQSLPCQSSTLMQPQMLHQSQPQQAFLQSVQENQQHSQPQSQTQSHHLQPQLPQQSFNNHSQQHQQQPRQTQPLDHQQIPSSIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPATSPTVSPLHSLAGSFVQDDSSQLLNLQRAHSVIPSAGWPSKRAAIDPLCTGASQYFLPQVEMLGTQQSSISQNTVALPPFPGRECPIDDREESSDPQNHVLFGVNIDSSSLLMQNGMSTLRGVCNDSVSTTLPFSSNYMSTAGTNFPVNPTMTSSNCIDESGLLQSHENVGQVNPPNGTFVKVHKSGTYSRSLDITKFNSYPELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPEEVQDMGKRGLELLNSVPIQRLSNSTCDDYGSRQDSRNLISGIASVGPLDY* 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 22768203 22775572 - CsaV3_1G036890.1 Csa01g02582 517079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02582 899 SMART B3_2 127 229 IPR003340 GO:0003677
Csa01g02582 899 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Csa01g02582 899 Pfam AUX/IAA family 757 855 IPR033389 -
Csa01g02582 899 Gene3D - 291 363 - -
Csa01g02582 899 MobiDBLite consensus disorder prediction 497 594 - -
Csa01g02582 899 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 878 IPR044835 GO:0003677|GO:0006355|GO:0009725
Csa01g02582 899 PANTHER AUXIN RESPONSE FACTOR 6 1 878 - -
Csa01g02582 899 Gene3D - 125 228 IPR015300 -
Csa01g02582 899 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Csa01g02582 899 ProSiteProfiles PB1 domain profile. 766 850 IPR000270 GO:0005515
Csa01g02582 899 CDD B3_DNA 126 227 IPR003340 GO:0003677
Csa01g02582 899 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Csa01g02582 899 Gene3D - 764 855 - -
Csa01g02582 899 SUPERFAMILY CAD & PB1 domains 756 841 - -
Csa01g02582 899 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02582 Csa06g03820 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02582 Csa-Chr1:22768203 Csa06g03820 Csa-Chr6:30293446 0 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30788 PF02309 AUX_IAA 3.30E-07 CL0072 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02582 - - csv:101211705 1728.76