Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02616 ATGGCATCTTTTGTAAAGCCAGAGAATGCTTTAAAACGAGCCGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCCCTTCATGATCTTATCACTTCAAAAAAATATCGAGCATGGCAGAAACCTCTTGAGAGGATTATGTTTAAATATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTGATTCAATATCGTATTGTTTGCCAGCAAGTCAATGTTACTTCCTTGGAGGAAGTAATCAAGCACTTCATGCATCTTTCCACTGAGAAGGCAGAGCAGGCTCGTACTCAAGCTCAAGCCTTAGAAGAAGCTCTGGATGTTGATGATTTGGAAGCTGATAAAAGACCGGAAGATCTGATGCTTAGTTATGTTAGTGGTGAAAAGGGAAAAGATAGATCTGATCGTGAACTTGTTACCCCCTGGTTTAAATTTCTGTGGGAGACCTATAGAACGGTTCTTGATATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCTCATCGTGCCTTCCAGTTCTGTAAAGTGTATAAAAGAACAACAGAGTTTCGTAGGTTATGTGAAATTATCAGAAATCATCTTGCTAATCTCAATAAGTATAGAGACCAAAGGGATCGGCCTGATCTTTCTGCCCCAGAGAGTTTGCAATTGTACCTTGACACAAGATTTGAACAGCTGAAGGTTGCCACAGAGCTTGAGCTCTGGCAGGAAGCTTTTCGTTCCGTGGAAGATATTCATGGATTGATGTGCATGGTGAAGAAAACACCCAAACCATCTTTGATGGTGGTGTATTACGTCAAATTAACAGAGATTTTCTGGATATCAGATAGCAATCTTTATCATGCTTATGCATGGCTTAAACTTTTCTCCCTTCAGAAGAGTTTCAACAAAAATTTAAGCCAGAAGGATTTGCAGCTGATAGCTTCTTCTGTTCTTTTAGCAGCACTTGCAGTGTCTCCCTACGACTCTAAGCATGGTGCATCTCATTTAGAACTTGAACATGAGAAAGAACGGAATTTGAGGATGGCCAATCTTATAGGGTTCAGTTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGAAAATCTTTTTTCTGAACTGGTGTCTAAAGGAGTCCTAAGCTGTGCAACTCAAGAAGTTAAAGATCTTTATCATCTTTTGGAGCACGAATTCTTTCATCTTGACCTTGCAACAAAACTGCAACCCTTGCTAAACAAAGTGTCAAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCTGAAGTCCAATTGTCCCAATATGTTCCTGCTCTTGAAAAACTTGCTACCCTGAGGCTGCTTCAGCAGGTCTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTGTCGCAGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGGCATGAAAGTTGATCATTCGAGGAACATTGTGTTATTTGGCAATCTGGGTATCGAATCGGATGGGCTTCGGGACCATCTAACTGTTTTCGCAGAATCCTTAAACAAAGCAAGAGCTATGATCTATCCTCCAGTTTTGAAGGCATCAAAAACAAGTGATATATTGCCAGATTTAGCAGATATTGTCGATAAGGAGCACAAGAGGCTCCTTGCTCGGAAATCTATAATTGAGAAAAGGAAGGAAGAGCAGGAACGACAACTTCTTGAAATGGAACGCGAGGAGGAATCAAGAAGGTTAAAATTACAGAAGATAACAGAAGAGGCTGAGCAGAAGCGGCTTGCTGCAGAATATGAACAAAGAAAAAACCAACGGATTCGCAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTTTACTTCAGGAAGCTGAAAAGCGTGTCGGTAAAAAGAAGGGAAGCAGGAAGCCGGTTCTCGACTCTGAAAAGTTGACAAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTGAGGGAGAGGCAGGAAATGGAAAAGAAGTTACAAAAGCTAGCTAAAACTATGGATTATCTAGAAAGAGCAAAAAGAGAAGAAGCTGCAACATTAATTGAAGCTGCATTTCAGCAACGGTTGCTTGAAGAAAGAATGATTCATGAACGTGATCAACAGCTGGAGGTAGAGTTAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAAAAGAATCGATTGTCTAGAATGATGGAGAGTAAGAAAAGTTTCCAAGAAAGAGTAATTAGTCTTCGTCAAGAGGAATTCAGCAGACGTAGAGATGAGAGAGAAGAGCATATCAGGCAAATAATTCAGGCCCGGAAAGCAGAAAGGGAGGCTCAGAGAAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTACGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCGGAGAGGAGAAAGAAGAAGCTGAAGACAGCTGAACGCTAA 2502 41.09 MASFVKPENALKRAEELINVGQKQDALQALHDLITSKKYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARTQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLDILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDSNLYHAYAWLKLFSLQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRENLFSELVSKGVLSCATQEVKDLYHLLEHEFFHLDLATKLQPLLNKVSKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPFFDFSAVEKISVDAVKQNFIGMKVDHSRNIVLFGNLGIESDGLRDHLTVFAESLNKARAMIYPPVLKASKTSDILPDLADIVDKEHKRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLQKITEEAEQKRLAAEYEQRKNQRIRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLTKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAATLIEAAFQQRLLEERMIHERDQQLEVELSKQRHEGDLKEKNRLSRMMESKKSFQERVISLRQEEFSRRRDEREEHIRQIIQARKAEREAQRKKIFYVRREEERIRILREEEEARKREEAERRKKKLKTAER* 834
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23139850 23147009 + CsaV3_1G037230.1 Csa01g02616 517113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02616 833 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Csa01g02616 833 Coils Coil 669 699 - -
Csa01g02616 833 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 833 IPR027512 GO:0005852
Csa01g02616 833 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 827 - -
Csa01g02616 833 SMART PINT_4 441 532 IPR000717 -
Csa01g02616 833 Coils Coil 799 831 - -
Csa01g02616 833 Pfam PCI domain 373 509 IPR000717 -
Csa01g02616 833 Gene3D UVR domain 217 268 - -
Csa01g02616 833 Coils Coil 610 649 - -
Csa01g02616 833 Gene3D - 363 493 - -
Csa01g02616 833 Gene3D - 269 343 - -
Csa01g02616 833 Coils Coil 774 794 - -
Csa01g02616 833 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Csa01g02616 833 Coils Coil 561 595 - -
Csa01g02616 833 Coils Coil 93 120 - -
Csa01g02616 833 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 827 IPR027512 GO:0005852
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02616 Csa-Chr1:23139850 Csa01g02618 Csa-Chr1:23169429 0 dispersed
Csa01g02616 Csa-Chr1:23139850 Csa01g02617 Csa-Chr1:23149062 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02616 K03254 - csv:101209344 1446.8