Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02617 ATGACATCTTTTGTAAAGCCAGAGAATGCCTTAAAACGAGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCTTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAGATATCGAGCATGGCAGAAACCTCTTGAGAAGATTATGTTCAAGTATGTTGAACTCTGTGTGGATATGAGGAAAGGAAGGTTTGCTAAGGATGGTTTAATTCAATACCGTATTGTTTGTCAGCAAGTCAATGTTACTTCTTTAGAGGAAGTAATTAAGCACTTTATGCATCTTTCTACTGAGAAGGCAGAGCAAGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCCCTGGATGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGCGGTGAAAAGGGAAAAGATAGATCTGATCGTGAACTTGTTACCCCCTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTACTTGAAATACTAAGGAATAACTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTCTGTAAGGTGTACAAAAGAACAACAGAATTTCGCAGATTATGTGAAATTATTAGAAATCATCTTGCTAATCTCAACAAGTTTAGAGATCAAAGGGATCGGCCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTTGACACAAGAATTGAACAGCTGAAGGTTGCCACAGAGCTGGAGCTCTGGCAGGAAGCTTTTCGTTCTGTGGAGGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTTTGGAAATCAGATAGCAATCTTTATCATGCTTATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTTATAGCTTCGTCGGTTCTTTTAGCAGCTCTTGCAGTGTCCCCCTATGACTCTAAGCATAGTGCTTCTCATTTAGAACTTGAACATGAGAAAGAGAGGAATTTGAGGATGGCTAATCTTATAGGGTTCAATTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCGAATCTTCTTTCTGAACTGGTGTCTAAAGGAGTCCTGAGTTGCGCAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAGTTCTTTTCTCTTGATCTTGCAATAAAGTTGCAACCCTTACTTGACAAAATATCGAAGCTTGGAGGTAAGCTTTCATCTGCTTCATCTGTCCCTGAAGTGCAATTATCCCAATATGTCCCGGCTCTTGAAAAGCTTGCTACCCTGATGCTGCTTCAGCAGGTCTCCAAGGTGTATCAAACTATGAAAATTGAGAGCTTATTGCGGATGATCCCATTTTTTGATTTTTCTGCCGTGGAGAAAATATCAGTTGATGCAGTTAAACAAAATTTCATTGCCCTGAAAGTTGATCATTCGAGGAACATTGTGCTATTTGGCGATTTGGTTATCGAATCAGATGAGCTTCGAGGCCACCTGACTGTTCTTGCTGAATCCCTTAACAAAGCAAGAGCTATGATCTGTCCTCCAGTTAGGAAAGCCTCAAAAACAGGTGATATATTGCCTGATTTGGCCGATATTGTTGATAAAGAGCACAGGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCAGGAACGTCAACTTTTGGAAATGGAACGTGAGGAGGAATCAAGAAGGTTAAAATTACTAAAGATAACTGAAGAAGCCGAGCAGAAGCGGCTTGCTGCAGAATACGAACAAAGGAAAAACCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCTCTACTTCAAGAAGCTGAAAAGCGTGTTGGTAAAAAGAAGGGAAGCAGGAAACCGGTTCTTGATTCAGAAAAATTGTCGAAACAAACTTTAATGCAATTGGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTAGCTAAAACTATGGATTATCTGGAAAGAGCAAAAAGAGAAGTGGTGGCACCATTAATTGAAGCTTCATTTCAGCAACGTTTGCTGGAAGAGAGAATGGTTCATGAACGTAATCAGCAGCTGGAGGTCGAGATAAGCAAGCAGCGCCATGAAGGTGACCTCAAGGAGAAGAATCGATTGGCGAGAATGTCGGAGAGTAAGAAAAGTTTCCAAGGAAGAGTAATTAGTCTTCGCCAAGAGGAATTCAGCAGACGTAGAGCTGAGAGAGAAGAACATATCAGGCTAATAATTGAGGCTCGGAAAACAGAAAGGGAGGTTAAGAGGAAGAAAATCTTTTATGTAAGACGTGAAGAGGAGAGAATTAGAATATTAGGTGAAGAGGAGGAAGCTCGCAAGCGTGAAGAGGCCGAGAGGAGAAAGAGGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAAATTGCAGAGAAGCAGAGACAGAGGGAGCGAGAATTGGAAGAAAAAGAAAGATTGAGGAAACAAAGTCTCTTCGGTGCTGCCAGATCAGCTGATGCACCTGCTAGACCTGACATTGCTCCTGGCTCTCGACCTTTGGAGTCTGGGACTGCTGCTCCTGCCGCTGCTGCTGCTGCTGCCGCACCATCCCCAGCAAAATATGTGCCAAAGTTTCGACGAACTGAAGGCTCCAGCCCTAATGCACCACCACCTGAATCTGATCGATGGGGAGGCAGCCGGGCTGATAATCGACCATCTCAACCGGATAGTTGGCGCAGTGATGACCGTAGACCTGCGTTAGGAAGTTCAAGGACATCGTGGTCCTCATCCCGAGTTCGTCCAGACCGCTGA 2898 42.68 MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKFRDQRDRPDLSAPESLQLYLDTRIEQLKVATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWKSDSNLYHAYAWLKLFSIQKSFNKNLSQKDLQLIASSVLLAALAVSPYDSKHSASHLELEHEKERNLRMANLIGFNLDSKLESRDVLSRANLLSELVSKGVLSCAIQEVKDLYHLLEHEFFSLDLAIKLQPLLDKISKLGGKLSSASSVPEVQLSQYVPALEKLATLMLLQQVSKVYQTMKIESLLRMIPFFDFSAVEKISVDAVKQNFIALKVDHSRNIVLFGDLVIESDELRGHLTVLAESLNKARAMICPPVRKASKTGDILPDLADIVDKEHRRLLARKSIIEKRKEEQERQLLEMEREEESRRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREVVAPLIEASFQQRLLEERMVHERNQQLEVEISKQRHEGDLKEKNRLARMSESKKSFQGRVISLRQEEFSRRRAEREEHIRLIIEARKTEREVKRKKIFYVRREEERIRILGEEEEARKREEAERRKREEAERKAKLDEIAEKQRQRERELEEKERLRKQSLFGAARSADAPARPDIAPGSRPLESGTAAPAAAAAAAAPSPAKYVPKFRRTEGSSPNAPPPESDRWGGSRADNRPSQPDSWRSDDRRPALGSSRTSWSSSRVRPDR* 966
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23149062 23162675 - CsaV3_1G037240.1 Csa01g02617 517114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02617 965 Pfam PCI domain 374 509 IPR000717 -
Csa01g02617 965 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 - -
Csa01g02617 965 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 912 IPR027512 GO:0005852
Csa01g02617 965 Coils Coil 669 699 - -
Csa01g02617 965 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 912 - -
Csa01g02617 965 SMART PINT_4 441 532 IPR000717 -
Csa01g02617 965 MobiDBLite consensus disorder prediction 814 859 - -
Csa01g02617 965 Coils Coil 603 649 - -
Csa01g02617 965 MobiDBLite consensus disorder prediction 814 965 - -
Csa01g02617 965 Gene3D UVR domain 217 268 - -
Csa01g02617 965 Gene3D - 362 494 - -
Csa01g02617 965 Gene3D - 269 346 - -
Csa01g02617 965 Coils Coil 561 600 - -
Csa01g02617 965 Coils Coil 809 858 - -
Csa01g02617 965 Coils Coil 93 120 - -
Csa01g02617 965 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Csa01g02617 965 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 957 IPR027512 GO:0005852
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02616 Csa-Chr1:23139850 Csa01g02617 Csa-Chr1:23149062 0 tandem
Csa01g02617 Csa-Chr1:23149062 Csa01g02618 Csa-Chr1:23169429 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02617 K03254 - csv:101215504 1678.3