Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02618 | ATGACGTCTTTTGTAAAGCCAGAGAATGCTTTAAAACGTGCTGAAGAGCTGATAAATGTTGGCCAGAAGCAAGATGCCTTGCAAGCTCTTCATGATCTTATAACTTCAAAGAGATATCGAGCATGGCAGAAACCCCTTGAGAGGATTATGTTTAAGTATGTTGAGCTCTGTGTGGACATGAGGAAAGGAAGGTTTGCAAAAGATGGATTAATTCAATACCGTATTGTTTGCCAGCAAGTCAATGTTACTTCTTTGGAGGAAGTTATCAAGCATTTTCTGCATCTTTCAACTGAGAAGGCAGAGCAGGCTCGTAGTCAAGCTCAAGCCTTAGAAGAAGCTCTGGACGTTGATGATTTGGAAGCTGATAAAAGACCAGAAGATCTGATGCTTAGTTATGTCAGTGGTGAAAAGGGAAAGGATAGATCTGATCGTGAACTTGTTACCCCTTGGTTTAAATTTCTGTGGGAGACATATCGAACAGTTCTGGAGATATTACGAAATAATTCAAAGTTGGAGGCACTTTATGCGATGACAGCCCATCGTGCCTTCCAGTTTTGTAAGGTGTACAAAAGAACAACAGAATTTCGCCGATTATGTGAAATTATTAGAAATCATCTTGCTAATCTGAACAAGTATAGAGACCAGAGGGATCGACCTGATCTTTCTGCTCCAGAGAGCTTGCAATTATACCTTGACACAAGATTTGAGCAGCTGAAGGTTGCCACAGAGCTCAAGCTCTGGCAGGAAGCTTTTCGCTCTGTGGAAGATATTCATGGTTTGATGTGTATGGTGAAGAAAACACCTAAACCATCCTTGATGGTGGTGTATTACGTCAAATTAACAGAGATCTTTTGGATATCGGATAACAATCTTTATCATGCACATGCATGGCTTAAACTTTTCTCCATTCAGAAAAGTTTCAACAAAAATCTAAGCCAGAAGGATTTGCAGCTGATAGCTTCATCTGTTATTTTGGCAGCGCTTGCAGTGTCTCCCTATGACTCTAAGCATGGTGCTTCCCATTTAGAACTTGAACATGAGAAAGAGCGGAATTTGAGGATGGCTAATCTGATAGGTTTCAGTTTAGATTCCAAACTTGAAAGTAGAGATGTGCTTTCAAGGGCGAATCTTCTTTCTGAACTGGTGTCAAAAGGAGTCCTTAGCTGCACAATTCAGGAAGTTAAAGATCTCTATCATCTTTTGGAGCATGAATTCTTCCCTCTTGATCTTGCAACAAAATTGCAACCCTTGCTTAACAAAATATCGAAGCTTGGAGGTAAGCTTTCATCAGCTTCATCTGTCCCCGAAGTGCAATTGTCCCAGTATGTTCCGGCTCTTGAAAAACTTGCTACCTTGAGGCTGCTTCAGCAGGTTTCCAAGGTGTATCAGACTATGAAAATTGAGAGTCTATCGCAGATGATCCCATATTTTGATTTTTCTGCCGTGGAAAAAATATCAGTTGATGCAGTTAAACAAAATTTCGTTGCCATGAAAGTTGATCATTCAAGGAACATTGTGTTATTTGGCAATTTGGGTATCGAATCAGATGGGCTTCGAGACCACCTGACCGTTCTTGCTGAATCCTTAAACAAGGCAAGAGCTATGATCTACCCTCCAGTTGGGAAAGCCTCAAAAACAAGTGATATACTGCCGGACTTGGCAGATATTGTTGATAAAGAGCACAAGAGGTTGCTTGCTCGGAAATCAATAATTGAGAAAAGGAAGGAAGAGCTGGAACGACAGCTTTTGGAAATGGAACGTGAGGAGGAGTCAAAAAGGTTAAAATTACTGAAGATAACTGAAGAAGCCGAGCAGAAGCGACTTGCTGCAGAATACGAACAAAGGAAAAATCAACGGCTTCGTAGGGAAATAGAAGAGCGAGAACTTGAAGAAGCACAGGCGCTACTTCAGGAAGCTGAAAAGCGGGTTGGCAAAAAGAAGGGAAGCAGGAAACCAGTTCTTGACTCTGAAAAGTTGTCGAAACAAACTTTAATGCAGTTAGCCCTTACTGAACAATTAAGGGAGAGGCAGGAAATGGAGAAGAAATTACAAAAGCTCGCCAAAACTATGGATTATTTAGAAAGAGCTAAAAGAGAAGAGGCAGCACCGTTAATTGAAGCTGAATTTCAGCAACGCTTGCTTGAAGAGAGAATGATTCACGAACGTAATCAGCAGCTGGAGGTTGAGTTAAGCAAGCATCGCCATGAAGGTGACCTCAAGGAGAAGAATCGAATGGCGAGAATGTTGGAGAGTAAGAAAAGTTTCCAAGAAAGAGTAATTAGTCTTCGTCAAGATGAATTCAGCAGACGTAGAGCCGAGAGAGAAGAGCATATCAGGCAAATAATTCAGGCACGGAAAGCAGAAAGGGAGGCTCAGAGAAAGAAAATCTTTTATGTAAGGCGTGAAGAGGAGAGGATTAGAATATTATGTGAAGAGGAGGAAGCACGCAAGCGTGAAGAGGCGGAGAGAAGAAAGAAGGAAGAAGCTGAACGCAAGGCTAAATTGGATGAGATAGCTGAGAAGCAGAGACAGAGAGAGCGAGAGTTGGAAGAAAAAGAGAGACTGAGGAAAGAAAGTCTCTTTGGTAGTGCCAGATCAGGTGATGCTCCTGCTCGACCTGATGTTGCTCCTAGTTCTCGACCTCTGGAGCCCGTGACTGCTGCTCCTGCCGCCGCTGCAGCAGCTGCTGCTGCTGCTGCAACATCCCCAGCGAAATACGTGCCAAAGTTTCGACGGAGTGAAGCCTCCAACCCTGATGCACCACCACCTGAATCTGGTCGATGGGGAAGCAGCCGGCCTGATAATCGACCTTCTCGACCCGACAGTTGGCGTAATGATGACAGCAGATCTGGGTTTGGAAGTTCAAGGCCATCATGGTCCTCATCTCGAGTTCGTTCCAGTACAGACCGCTGA | 2913 | 43.29 | MTSFVKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLERIMFKYVELCVDMRKGRFAKDGLIQYRIVCQQVNVTSLEEVIKHFLHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKVYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKVATELKLWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISDNNLYHAHAWLKLFSIQKSFNKNLSQKDLQLIASSVILAALAVSPYDSKHGASHLELEHEKERNLRMANLIGFSLDSKLESRDVLSRANLLSELVSKGVLSCTIQEVKDLYHLLEHEFFPLDLATKLQPLLNKISKLGGKLSSASSVPEVQLSQYVPALEKLATLRLLQQVSKVYQTMKIESLSQMIPYFDFSAVEKISVDAVKQNFVAMKVDHSRNIVLFGNLGIESDGLRDHLTVLAESLNKARAMIYPPVGKASKTSDILPDLADIVDKEHKRLLARKSIIEKRKEELERQLLEMEREEESKRLKLLKITEEAEQKRLAAEYEQRKNQRLRREIEERELEEAQALLQEAEKRVGKKKGSRKPVLDSEKLSKQTLMQLALTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAEFQQRLLEERMIHERNQQLEVELSKHRHEGDLKEKNRMARMLESKKSFQERVISLRQDEFSRRRAEREEHIRQIIQARKAEREAQRKKIFYVRREEERIRILCEEEEARKREEAERRKKEEAERKAKLDEIAEKQRQRERELEEKERLRKESLFGSARSGDAPARPDVAPSSRPLEPVTAAPAAAAAAAAAAATSPAKYVPKFRRSEASNPDAPPPESGRWGSSRPDNRPSRPDSWRNDDSRSGFGSSRPSWSSSRVRSSTDR* | 971 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 23169429 | 23177836 | - | CsaV3_1G037250.1 | Csa01g02618 | 517115 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02618 | 970 | Gene3D | UVR domain | 217 | 268 | - | - | |
Csa01g02618 | 970 | MobiDBLite | consensus disorder prediction | 816 | 970 | - | - | |
Csa01g02618 | 970 | Hamap | Eukaryotic translation initiation factor 3 subunit A [EIF3A]. | 1 | 939 | IPR027512 | GO:0005852 | |
Csa01g02618 | 970 | Coils | Coil | 669 | 699 | - | - | |
Csa01g02618 | 970 | Coils | Coil | 810 | 858 | - | - | |
Csa01g02618 | 970 | ProSiteProfiles | PCI domain profile. | 316 | 513 | IPR000717 | - | |
Csa01g02618 | 970 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A | 1 | 916 | - | - | |
Csa01g02618 | 970 | Coils | Coil | 603 | 649 | - | - | |
Csa01g02618 | 970 | SMART | motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 | 441 | 532 | - | - | |
Csa01g02618 | 970 | Coils | Coil | 561 | 600 | - | - | |
Csa01g02618 | 970 | MobiDBLite | consensus disorder prediction | 947 | 970 | - | - | |
Csa01g02618 | 970 | MobiDBLite | consensus disorder prediction | 816 | 861 | - | - | |
Csa01g02618 | 970 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT | 1 | 916 | IPR027512 | GO:0005852 | |
Csa01g02618 | 970 | Coils | Coil | 774 | 794 | - | - | |
Csa01g02618 | 970 | Pfam | PCI domain | 374 | 509 | IPR000717 | - | |
Csa01g02618 | 970 | Coils | Coil | 93 | 120 | - | - | |
Csa01g02618 | 970 | SMART | PINT_4 | 441 | 532 | IPR000717 | - | |
Csa01g02618 | 970 | Gene3D | - | 363 | 494 | - | - | |
Csa01g02618 | 970 | Gene3D | - | 269 | 343 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02616 | Csa-Chr1:23139850 | Csa01g02618 | Csa-Chr1:23169429 | 0 | dispersed | |
Csa01g02617 | Csa-Chr1:23149062 | Csa01g02618 | Csa-Chr1:23169429 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02618 | K03254 | - | csv:101215735 | 1650.18 |