Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02621 ATGTCTTTTCTTCGACCTTACGGTAAGGTCGATGAAACCGACCAATTGAGGCTCGACGCTAGACGGAGGACTCGTAGGAGGATTGTTGTCATTGTTTTATCCTCTGTTGTTCTCGTTGCTGTTGTTGTTGCTGTTGTTTTTGGTACTAGAAATGCTTCTAATAACAATGATGACAGTAACAATCAAAATGGTTCTCTTTCAACTTCAATCAAAGCAGTTTGTGATGTGACATTGTATCCTGATACATGTCAAAAGGCTTTTGGTCCAATAGCTAACTCGAGCCACCTCGATCCCGGTCAAATATCGAAGCTTTCGGTTCAATTGGCTCTTGGTGAATTATCAAAAGTGGCTGACTACATTTTTGATCATGCTATTACCAAAACAGCTGACAACAAGACCATATTGGCTTTGAAAAATTGTCATGAACTTTTGGACTTAGCTTTGGATCATTTGAATATCTCATTGTCTTCTAGTGATATTACGTTACTGAAAGCTGTGGATGATTTGAAAACATGGATAACTTCAGCAGCCACTTACCAACAGACTTGCATCGATGATCTTGCCGAAGTTGATCCTGCTTTGGCAGACCTCGTTGCAAATTTCTTGAAGAACTCCACTGAGTTGACTAGTAATGGACTTGCCATTGTATCGTTCTTTTCGAAGCTAACGGATTCTTTAAGTCTACGACGATTGATGAGTTATGAAAACCATCAAAGCAATGGAGATTGGGCACGTCCAATCCTCCGAAAGCTGGCTCAAAGTGATATCAGGAAGCATGCTGACATTGTTGTAGCGAAAGACCGTTCGGGGAAGTACAAAACAATCACTGAAGCTCTCGGGGCTGTTCCTGATAAGAGCAAGAAGAGAACTGTAATTTATGTGAAGAAGGGAATTTACAAGGAGAACGTTGAAGTTGTGAAGAACAAATGGAATGTGGTTATGGTTGGTGATGGAATGACTGCAACCATAGTAAGTGGCAACCTTAATGTCGTAGATGGAACACCAACATTTTCAACTGCAACATTTGCTGCAAAGGGAAAAGGCTTCATTGCTATAGACATGGGATTCATAAACACGGCTGGACCGAGCAAACACCAAGCAGTCGCTCTGATGTCGACATCTGACCAATCGATCTTCTACCGTTGTGAAATGAATGCATACCAAGACACTCTCTACGCACACTCCAACCGTCAATTCTACCGTGAATGTAAGGTTTACGGCACAGTCGATTTCATCTTTGGAAACTCAGCAGTAGTCCTACAAAACTGCACCATTGCACCAAGGTTGCCTCTTTTAGGCCAAAAGAACACAATCACTGCTCAAGGCAGGTTTGATCCTAATCAAAACACTGGCATTTCGATACAAGGTTCTTTGATCCAACCGTTCAACGACTTGAAAACTACCGAAACTTACCTCGGTCGTCCATGGAAGAACTACTCGACAACCGTGTTTATGCAAAGTAATTTGGGGAGGTTGATTCACCCAACTGGTTGGCTGCCATGGATTGGAACATCAGCACCAGACACCATATTCTATGCAGAGTTTCAAAACTATGGCCCTGGTTCTTCCACATCCAAAAGAGTTAAATGGAAGGGTGTCAAGAACATTGACACTAAAACTGCCAAAAAGTTCACAGTTTCTTCCTTCATTGATGGTAAAGATTGGATCTCAAAGGCACAAGTTCCCTTCACTGCCACTCTCTGA 1704 42.14 MSFLRPYGKVDETDQLRLDARRRTRRRIVVIVLSSVVLVAVVVAVVFGTRNASNNNDDSNNQNGSLSTSIKAVCDVTLYPDTCQKAFGPIANSSHLDPGQISKLSVQLALGELSKVADYIFDHAITKTADNKTILALKNCHELLDLALDHLNISLSSSDITLLKAVDDLKTWITSAATYQQTCIDDLAEVDPALADLVANFLKNSTELTSNGLAIVSFFSKLTDSLSLRRLMSYENHQSNGDWARPILRKLAQSDIRKHADIVVAKDRSGKYKTITEALGAVPDKSKKRTVIYVKKGIYKENVEVVKNKWNVVMVGDGMTATIVSGNLNVVDGTPTFSTATFAAKGKGFIAIDMGFINTAGPSKHQAVALMSTSDQSIFYRCEMNAYQDTLYAHSNRQFYRECKVYGTVDFIFGNSAVVLQNCTIAPRLPLLGQKNTITAQGRFDPNQNTGISIQGSLIQPFNDLKTTETYLGRPWKNYSTTVFMQSNLGRLIHPTGWLPWIGTSAPDTIFYAEFQNYGPGSSTSKRVKWKGVKNIDTKTAKKFTVSSFIDGKDWISKAQVPFTATL* 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23197757 23200086 + CsaV3_1G037280.1 Csa01g02621 517118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02621 567 SMART PMEI_2 65 215 IPR006501 GO:0004857
Csa01g02621 567 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Csa01g02621 567 SUPERFAMILY Pectin lyase-like 259 566 IPR011050 -
Csa01g02621 567 PANTHER PECTINESTERASE 19 563 - -
Csa01g02621 567 CDD PMEI-like_3 72 221 - -
Csa01g02621 567 Pfam Plant invertase/pectin methylesterase inhibitor 69 215 IPR006501 GO:0004857
Csa01g02621 567 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 69 220 IPR035513 -
Csa01g02621 567 Gene3D - 256 567 IPR012334 -
Csa01g02621 567 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 219 IPR035513 -
Csa01g02621 567 Pfam Pectinesterase 261 552 IPR000070 GO:0030599|GO:0042545
Csa01g02621 567 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Csa01g02621 567 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 24-RELATED 19 563 - -
Csa01g02621 567 TIGRFAM PME_inhib: pectinesterase inhibitor domain 41 216 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02621 Csa-Chr1:23197757 Csa01g02747 Csa-Chr1:24351481 8.46E-146 dispersed
Csa01g02621 Csa-Chr1:23197757 Csa03g02796 Csa-Chr3:26809996 1.94E-167 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02621 - - csv:101210577 1043.49