Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02626 ATGAGTCATTTTCCTGGGGATTTGAGGAGACCTGAATCAGCTAAAAGTAGATTGAAAGATTTATTGCTTCAGATAGATAATCAACTTTGTGCGGATTGTGGTGCCCCGGATCCCAAATGGGCCTCTGCGAATATCGGTGTGTTTATTTGCTTAAAATGTAGTGGCGTGCACAGAAGCCTTGGAACACATGTATCAAAGGTTTTGTCAATAACATTGGATGAATGGTCTGACGATGAGATTGATGCAATGATAGAGGTTGGAGGAAATGGTTCAGCTAATGCAATATATGAGGCTTTTATCCCTGATGGATATACAAAGCCTGGACCAAGTGCCAACCATGAGGAGCGTTCAAATTTCATTCGGTCTAAATATGAACTTCAAGAATTTTTAAAACCGAGCTTGCGAATTGTATCCAATAACTCCTCAAAGAGTTCTGAGGAGCCAAGTTATTTTCAAGAGATCACTGATAGCTTTCGAAGCTCAAGTTCTTCAAAGAAATCACCACAGGAAGGCATGATTGAATTTATGGGATTATTGAAAGTCAAGGTGATTGAAGGCACAAACTTAGCTGTGAGAGATGTGAAGACCAGTGATCCTTTTGTTACCTTAACTCTTGGACAACAGACTGCTAAAACAACGGTGATAAAGAGCAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTTTCGGTTCCTCTGGAATATGGACCCTTGAAGTTGCAAGTGTTCGATCACGACATAATTTTATCTAATGACTTGATGGGCGAAGCAGAAATCGACCTCCAACCGATGATAACATCAGCAATAGCATTTGGAGATGCTGAAATGCTTGAGAATATGCAGATTGGAAAATGGTTGAAGTCAGATGACAATGCCCTCGTCAATGACAGTGCTGTCGTCATCGTTGATGGGAAGGTGAAACAAGAGGTGTCACTCAAGCTCCAAAATGTAGAATCAGGTGAAGTGCACTTGGAACTAGAATGGATACCTATTGATCAATAA 1002 40.82 MSHFPGDLRRPESAKSRLKDLLLQIDNQLCADCGAPDPKWASANIGVFICLKCSGVHRSLGTHVSKVLSITLDEWSDDEIDAMIEVGGNGSANAIYEAFIPDGYTKPGPSANHEERSNFIRSKYELQEFLKPSLRIVSNNSSKSSEEPSYFQEITDSFRSSSSSKKSPQEGMIEFMGLLKVKVIEGTNLAVRDVKTSDPFVTLTLGQQTAKTTVIKSNLNPVWNEELMLSVPLEYGPLKLQVFDHDIILSNDLMGEAEIDLQPMITSAIAFGDAEMLENMQIGKWLKSDDNALVNDSAVVIVDGKVKQEVSLKLQNVESGEVHLELEWIPIDQ* 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23243264 23247779 - CsaV3_1G037330.1 Csa01g02626 517123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02626 333 Pfam C2 domain 177 266 IPR000008 -
Csa01g02626 333 Gene3D C2 domain 175 333 IPR035892 -
Csa01g02626 333 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 143 IPR001164 GO:0005096
Csa01g02626 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 10 333 - -
Csa01g02626 333 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Csa01g02626 333 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Csa01g02626 333 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Csa01g02626 333 Pfam Putative GTPase activating protein for Arf 17 131 IPR001164 GO:0005096
Csa01g02626 333 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 10 333 IPR044518 GO:0005096|GO:0005543
Csa01g02626 333 CDD ArfGap 18 124 - -
Csa01g02626 333 SMART C2_3c 178 273 IPR000008 -
Csa01g02626 333 ProSiteProfiles C2 domain profile. 160 276 IPR000008 -
Csa01g02626 333 CDD C2_ArfGAP 177 320 - -
Csa01g02626 333 SMART arf_gap_3 16 137 IPR001164 GO:0005096
Csa01g02626 333 Gene3D Arf GTPase activating protein 6 136 IPR038508 -
Csa01g02626 333 SUPERFAMILY ArfGap/RecO-like zinc finger 16 132 IPR037278 -
Csa01g02626 333 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 175 331 IPR035892 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02626 Csa-Chr1:23243264 Csa05g01664 Csa-Chr5:19769497 7.78E-111 dispersed
Csa01g00743 Csa-Chr1:4728771 Csa01g02626 Csa-Chr1:23243264 1.59E-27 transposed
Csa02g00140 Csa-Chr2:979042 Csa01g02626 Csa-Chr1:23243264 6.22E-09 transposed
Csa03g03660 Csa-Chr3:32582185 Csa01g02626 Csa-Chr1:23243264 1.65E-08 transposed
Csa03g04131 Csa-Chr3:36230661 Csa01g02626 Csa-Chr1:23243264 9.37E-27 transposed
Csa03g04367 Csa-Chr3:38142526 Csa01g02626 Csa-Chr1:23243264 1.18E-09 transposed
Csa04g00226 Csa-Chr4:1357655 Csa01g02626 Csa-Chr1:23243264 1.20E-18 transposed
Csa04g01283 Csa-Chr4:12977185 Csa01g02626 Csa-Chr1:23243264 4.05E-07 transposed
Csa05g01197 Csa-Chr5:12434134 Csa01g02626 Csa-Chr1:23243264 4.35E-19 transposed
Csa05g02849 Csa-Chr5:28851628 Csa01g02626 Csa-Chr1:23243264 1.21E-112 transposed
Csa01g02626 Csa-Chr1:23243264 Csa06g03849 Csa-Chr6:30542624 4.44E-168 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02626 K12486 - csv:101211569 644.425