Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02627 ATGGCTCTTGTCATGCATAGAGATTCCTTGAATAAGCAGATGGATACAAGCAAGTATGTGAGATATACGCCTGAACAAGTCGATGCATTAGAAAGGGTTTATGCAGAATGTCCGAAACCCAGTTCGTTGAGGAGGCAACAGCTCATTCGGGAGTGTCCCATTCTCTCTAATATTGAGCCTAAGCAGATCAAAGTTTGGTTCCAAAATCGCAGATGTCGTGAAAAGCAAAGGAAGGAAGCTTCTCGTCTTCAAACAGTTAATAGGAAGTTAACTGCGATGAACAAGCTGTTGATGGAAGAGAATGACCGTTTGCAGACGCAGGTCTCTCGTTTGGTTTACGAGAATGGATACATGAGACAGCAACTGCATACTGCATCTGGAACAACCACAGACAATAGCTGTGAGTCTGTGGTCATGAGTGGTCAACAGCATCAACAGCAAAACCCAACTAAGCATACTCAAAAGGATGCTAATAACCCAGCTGGTCTTCTTGCGATAGCCGAGGAGACCTTGGCAGAGTTCCTTTCCAAGGCAACAGGGACTGCTGTCGACTGGGTACAAATGATTGGGATGAAGCCTGGTCCGGATTCAATTGGGATTGTTGCTGTTTCCCGAAATTGCAATGGGGTAGCAGCACGAGCCTGTGGTTTAGTGAGTCTTGAGCCCATGAAGGTGGCCGAAATTCTCAAAGATCGTCTGTCATGGTTTCGTGACTGCCGTTGTGTTGATGTTCTAAGTGTAATCTCTACAGGAAATGGAGGGACCATAGAACTCTTATATATGCAGACATATGCACCTACAACTTTAGCCGCAGCACGTGACTTTTGGACTCTTCGATACACTACAAGCTTGGAAGATGGCAGCCTTGTGATATGTGAGAGATCATTAACATCGTCTACTGGTGGTCCATCAGGGCCCCCTCCATCCAGTTTTGTAAGAGCTGAAATGCTTCCAAGTGGGTACCTTATTCGAGCTTGTGAGGGTGGTTCTCTTATTCACATTGTCGATCATGTTGATTTAGATGTTTGGAGTGTTCCTGAAGTTCTAAGGCCCCTTTATGAATCGACAAAGATTCTAGCTCAGAGAACGACCGTTGCTGCCTTACGCTATGTTCGGCAAATTGCTCAAGAGGCGAGTGGTGAAGTTCAGCTGGGTGGGGGCCGCCAACCTGCTGTTTTAAGGACTTTCAGTCAAAGACTTTGTAGGGGTTTTAATGATGCAGTAAATGGATTTGTGGATGATGGTTGGTCGCTTATGGATAGCGACGGAGTTGAGGACGTGACAGTTGTTATTAATTCATCTCCAAACAAATTCCTCGGTTCACAATATAACACATCATTATATCCTACTTTTGGAGGTGTATTATGTGCCAAGGCATCAATGTTGCTCCAGAATGTTCCCCCTGCTTTGCTTGTTCGTTTCCTACGGGAGCATCGCTCAGAATGGGCTGATTATGGAGTCGATGCATACTCTGCTGCATGTCTTAAAGCCAGTGCATATGCTGTTCCGTGTGCAAGACCTGGTGGCTTCCCTGGTGGTCAGGTCATTTTACCACTTGCACATACGGTTGAGAATGAGGAGTTCTTGGAGGTTGTTCGGTTAGAGGGCCATGCTATGTTCCCTGAAGAAGCTGCTTTAGGAGGACGGGATATGTATTTATTGCAGCTGTGTAGTGGGGTCGATGAAAACACAGTTGGTGCCTGTGCTCAGCTTGTATTTGCACCTATAGACGAATCATTTGCTGATGATGCTCCCTTGCTGCCGTCTGGTTTTCGTGTCATACCATTGGAGTCCAAAGCAGAGATGCCTGGGGCTACTCGAACTTTGGATTTGGCATCTACTCTAGAAGTCCGACCTGGGACTAATCGCCCAGGATGTGAAACTGATGTTACAAACTACAACCTTAGGTCGGTCTTGACTATTGCATTCCAATTCACTTTTGAGAACCACATGCGGGATAGTGTGGCTGCTATGGCAAGACAATATGTGCGAACTGTTGTGGGGTCAGTTCAAAGGGTTGCCATGGCTATTGCTCCCTCGCAGCTTGGCTCCCAGATCGGTCCAAAAAGCCTTCCTGCCTCCCCTGAGGCTCTCACATTAGCTCAGTGGATCACACGAAGCTATAGAATCCACTCAGGGGCAGAGCTCTTTCAAGTTGAATCTCAATCTGGTGATGCTATATTGAAGCAGCTTTGGCACCACTCAGATACAATCTTGTGCTGCTCTGTCAAAACAAATGCATCTCCGGTATTCACATTTGCAAACCAAGCTGGACTTGACATGCTGGAAACTACCCTTGTTTCTCTTCAAGATATAACGCTCGAGAAGATCCTCGATGATGCTGGTAGGAAGATACTATGCTCCGAATTCTCCAAGATAATGCAACAGGGATTTGCATACCTTCCAGCAGGGATATGCGTCTCGAGTATGGGCAGACCGGTGTCGTATGAACAGGCTATTGCCTGGAAGGTTCTGAATGATGATGATGTCCATCACTGTCTGGCTTTCATGTTTGTAAACTGGTCCTTTATGTGA 2535 46.31 MALVMHRDSLNKQMDTSKYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQTVNRKLTAMNKLLMEENDRLQTQVSRLVYENGYMRQQLHTASGTTTDNSCESVVMSGQQHQQQNPTKHTQKDANNPAGLLAIAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPMKVAEILKDRLSWFRDCRCVDVLSVISTGNGGTIELLYMQTYAPTTLAAARDFWTLRYTTSLEDGSLVICERSLTSSTGGPSGPPPSSFVRAEMLPSGYLIRACEGGSLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRTTVAALRYVRQIAQEASGEVQLGGGRQPAVLRTFSQRLCRGFNDAVNGFVDDGWSLMDSDGVEDVTVVINSSPNKFLGSQYNTSLYPTFGGVLCAKASMLLQNVPPALLVRFLREHRSEWADYGVDAYSAACLKASAYAVPCARPGGFPGGQVILPLAHTVENEEFLEVVRLEGHAMFPEEAALGGRDMYLLQLCSGVDENTVGACAQLVFAPIDESFADDAPLLPSGFRVIPLESKAEMPGATRTLDLASTLEVRPGTNRPGCETDVTNYNLRSVLTIAFQFTFENHMRDSVAAMARQYVRTVVGSVQRVAMAIAPSQLGSQIGPKSLPASPEALTLAQWITRSYRIHSGAELFQVESQSGDAILKQLWHHSDTILCCSVKTNASPVFTFANQAGLDMLETTLVSLQDITLEKILDDAGRKILCSEFSKIMQQGFAYLPAGICVSSMGRPVSYEQAIAWKVLNDDDVHHCLAFMFVNWSFM* 845
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23252566 23260427 - CsaV3_1G037340.1 Csa01g02627 517124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02627 844 CDD homeodomain 18 78 IPR001356 GO:0003677
Csa01g02627 844 SMART HOX_1 15 81 IPR001356 GO:0003677
Csa01g02627 844 SMART START_1 165 374 IPR002913 GO:0008289
Csa01g02627 844 SUPERFAMILY Bet v1-like 166 376 - -
Csa01g02627 844 Pfam MEKHLA domain 699 843 IPR013978 -
Csa01g02627 844 MobiDBLite consensus disorder prediction 126 156 - -
Csa01g02627 844 Pfam START domain 166 373 IPR002913 GO:0008289
Csa01g02627 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 - -
Csa01g02627 844 CDD bZIP 70 109 - -
Csa01g02627 844 Gene3D - 185 375 IPR023393 -
Csa01g02627 844 Pfam Homeodomain 18 76 IPR001356 GO:0003677
Csa01g02627 844 SUPERFAMILY Homeodomain-like 18 80 IPR009057 -
Csa01g02627 844 Coils Coil 87 107 - -
Csa01g02627 844 ProSiteProfiles 'Homeobox' domain profile. 13 77 IPR001356 GO:0003677
Csa01g02627 844 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 6 844 IPR044830 GO:0003700
Csa01g02627 844 ProSiteProfiles START domain profile. 156 383 IPR002913 GO:0008289
Csa01g02627 844 Gene3D - 10 84 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02627 Csa-Chr1:23252566 Csa07g02448 Csa-Chr7:22354861 0 dispersed
Csa01g01393 Csa-Chr1:9473552 Csa01g02627 Csa-Chr1:23252566 1.01E-65 transposed
Csa06g01195 Csa-Chr6:10113736 Csa01g02627 Csa-Chr1:23252566 0 transposed
Csa01g02627 Csa-Chr1:23252566 Csa06g03845 Csa-Chr6:30511732 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30789 PF01852 START 3.10E-51 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02627 K09338 - csv:101211318 1659.81