Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02661 ATGTTCTGTAGTTTGTTTGAGATGGACAATAACAATTATCAGCAAGCTGGTGATTTGACTGATGTGATCCGACTGAGTTCCGCCCCTGTCGCCGGTCATTTCTCCTCCGAATTCTCTCTCGACCCGTTTTCCGGTGACAGACAACTCTGGTCGCACCTTCCTGCTGACAATTCTTCCATGAATTTTGGAGATCCGTTGTCGTTTCCAACTCGAGATCCATTTCTTCTTCCCCATTTTTCTCCCTTCAACTTTGCTTCGGATGGCGGCGGTGAGGGTTTGGCGGCGGACGACCAGCCGTCTAATTTACTTTCCCATATGTTGCAGATCTCTCCGAGTTCTGGTGATGGTGTAATTAGTACTCCTCCATGTGAGTCGCTCGCCACAGCAGTGGGGAATTCTCCGAGGTCGACTTCGGTTCGTGGTGGCGGTGGTCTTGTGCTTCCGACCGGTGGCTCGAACTCTCTTTGTTTAATGGAGAATTCCGGGATTCAGATCTCTTCTCCGCGAAATTCCGCCAATAAAAGAAGGAAGAGCCAAGTGAAGAAGGTGGTGTGTATTCCGGCACCGGCACCGGCGAACAGTCGATCAAGCAGCGGCGAAGTGGTTCCTTCCGATCTATGGGCATGGAGGAAGTACGGACAAAAGCCCATCAAAGGATCCCCATATCCAAGGGGATATTATAGGTGCAGTAGTTCCAAGGGCTGCTCCGCTCGAAAGCAGGTCGAGCGAAGTCGTACTAACCCCAACATGCTTGTCATCACCTACACTTCGGAGCACAACCACCCATGGCCCACTCAACGCAATGCCCTTGCAGGTTCTACTCGTTCCCATCCTTCACGAACCACCACCGCTACCACCGCTAATAAAACAAGCCCGAAACATGAGCGCATTAACGACATCCTGCCAACCACAACAATAAAGGAGGAAGAGATGGATGAAGACCAAATGACAGATAAAGCAACAACAACAAATGATAATCAGGAGGAGGGAGATCATCAAGATTTCCCTTATGACTTAATTTTCACTGAATTTGCAGATCAAATGAACGACCTCGAGCACGACAACAACCACGACCATAATCATCATCTTTCAGCAGACCCTCTGAACAACAATATGTTGATGTTTAGTAACCATGGATTTAGTGCAGGAAATGGAGAAGGCAGTAAAGATCCATTTTTGGAGCTCTATGATTGGGCAGAGAATTCAAGTGGAAGTTTGTTCAAAGAAGCCAAGGGAGGTTGA 1242 48.39 MFCSLFEMDNNNYQQAGDLTDVIRLSSAPVAGHFSSEFSLDPFSGDRQLWSHLPADNSSMNFGDPLSFPTRDPFLLPHFSPFNFASDGGGEGLAADDQPSNLLSHMLQISPSSGDGVISTPPCESLATAVGNSPRSTSVRGGGGLVLPTGGSNSLCLMENSGIQISSPRNSANKRRKSQVKKVVCIPAPAPANSRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTNPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTTTATTANKTSPKHERINDILPTTTIKEEEMDEDQMTDKATTTNDNQEEGDHQDFPYDLIFTEFADQMNDLEHDNNHDHNHHLSADPLNNNMLMFSNHGFSAGNGEGSKDPFLELYDWAENSSGSLFKEAKGG* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23633542 23637299 + CsaV3_1G037680.1 Csa01g02661 517158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02661 413 Pfam WRKY DNA -binding domain 205 262 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g02661 413 Gene3D WRKY domain 176 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g02661 413 MobiDBLite consensus disorder prediction 292 333 - -
Csa01g02661 413 ProSiteProfiles WRKY domain profile. 198 264 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g02661 413 SUPERFAMILY WRKY DNA-binding domain 201 264 IPR036576 GO:0003700|GO:0006355|GO:0043565
Csa01g02661 413 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 97 401 - -
Csa01g02661 413 MobiDBLite consensus disorder prediction 258 291 - -
Csa01g02661 413 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 97 401 IPR044810 GO:0003700
Csa01g02661 413 SMART WRKY_cls 203 263 IPR003657 GO:0003700|GO:0006355|GO:0043565
Csa01g02661 413 MobiDBLite consensus disorder prediction 258 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02303 Csa-Chr1:20150144 Csa01g02661 Csa-Chr1:23633542 1.23E-33 dispersed
Csa01g02661 Csa-Chr1:23633542 Csa06g03875 Csa-Chr6:30645979 4.07E-60 dispersed
Csa07g01660 Csa-Chr7:17076064 Csa01g02661 Csa-Chr1:23633542 1.16E-27 dispersed
Csa01g02661 Csa-Chr1:23633542 Csa03g00861 Csa-Chr3:7225695 4.07E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30793 PF03106 WRKY 4.20E-25 CL0274 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02661 - - csv:101220733 806.208