Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02688 ATGGATTATCGAGGTTTCAGTAGTAGACTGGAAACAAGCAACCCAAGTAAAGGCTATGCTCGGGAGCAGGAATCTCTTGGTGATGACTTTATAGATGATTTTCGCTTGCCCATCAACCATAAACCAACAGAAAACGTTGATCTTGATAATGTGGAACAAGCATCATTGGACACACAATTAACGTCATCAAATGTGGGATATAGGCTTCTTCAGAAGATGGGCTGGAAAGGGAAAGGACTAGGGAAGAATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATGAGAGATCCCAAACTCGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAAGAAAATATCCAGCGGAAAAAGCTTGATGTTGAGGTGGAGGAGACAGAAGAACATGCCAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTCAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAACTGGCAATGGAGTTTGAAGCCCATCTCAGCTCATATGATCATAATCACAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGGGATGACAGAAACAAACGGGAACAGCAACGGGAAGAGAGAGAGATGGCCAAATTTGCTCAAATTGCAGATGCCCGTAAGAAGCAGCAGCAGTTGTTGGAGCAACAAGCAAGGGCAGCCGAGGCTCCTGTTTCTACTGAACTTAGAAACGCTACATCAGTTGCAGATCAGGATCAGCGGAAAACATTGAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGAACATTTTTGGTGGAGCCAAAAAGAAACCGAAAGTAGCACCTGTAGCTTCTGTTTTTGGGAACGATAGCGATGATGAATAG 900 42.22 MDYRGFSSRLETSNPSKGYAREQESLGDDFIDDFRLPINHKPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKNEQGIIEPIKSGMRDPKLGIGKQEEDDFFTAEENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADARKKQQQLLEQQARAAEAPVSTELRNATSVADQDQRKTLKFGFSSKGGTSKNIFGGAKKKPKVAPVASVFGNDSDDE* 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23870947 23875162 - CsaV3_1G038040.1 Csa01g02688 517185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02688 299 MobiDBLite consensus disorder prediction 244 273 - -
Csa01g02688 299 MobiDBLite consensus disorder prediction 1 24 - -
Csa01g02688 299 ProSitePatterns Zinc finger C2H2 type domain signature. 159 181 IPR013087 -
Csa01g02688 299 SUPERFAMILY beta-beta-alpha zinc fingers 138 191 IPR036236 -
Csa01g02688 299 Coils Coil 220 240 - -
Csa01g02688 299 MobiDBLite consensus disorder prediction 190 214 - -
Csa01g02688 299 ProSiteProfiles G-patch domain profile. 62 107 IPR000467 GO:0003676
Csa01g02688 299 SMART G-patch_5 60 105 IPR000467 GO:0003676
Csa01g02688 299 MobiDBLite consensus disorder prediction 232 283 - -
Csa01g02688 299 Pfam Zinc-finger double-stranded RNA-binding 157 184 IPR022755 -
Csa01g02688 299 PANTHER FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED 4 299 - -
Csa01g02688 299 Pfam G-patch domain 63 103 IPR000467 GO:0003676
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02688 Csa-Chr1:23870947 Csa02g02765 Csa-Chr2:24059012 2.45E-08 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02688 - - csv:101216939 563.918