Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02688 | ATGGATTATCGAGGTTTCAGTAGTAGACTGGAAACAAGCAACCCAAGTAAAGGCTATGCTCGGGAGCAGGAATCTCTTGGTGATGACTTTATAGATGATTTTCGCTTGCCCATCAACCATAAACCAACAGAAAACGTTGATCTTGATAATGTGGAACAAGCATCATTGGACACACAATTAACGTCATCAAATGTGGGATATAGGCTTCTTCAGAAGATGGGCTGGAAAGGGAAAGGACTAGGGAAGAATGAGCAAGGAATTATTGAGCCAATAAAATCTGGAATGAGAGATCCCAAACTCGGAATTGGAAAACAAGAAGAAGACGATTTTTTCACTGCAGAAGAAAATATCCAGCGGAAAAAGCTTGATGTTGAGGTGGAGGAGACAGAAGAACATGCCAAAAAACGGGAGGTTTTAGCAGAACGTGAGGAGAAAATTCAAACTGAGGTCAAAGAAATACGCAAGGTTTTCTATTGTGATCTTTGCAACAAACAGTACAAACTGGCAATGGAGTTTGAAGCCCATCTCAGCTCATATGATCATAATCACAGAAAGCGTTTTAAAGAAATGAGAGAAATGCATGGTTCAAGCAGCCGGGATGACAGAAACAAACGGGAACAGCAACGGGAAGAGAGAGAGATGGCCAAATTTGCTCAAATTGCAGATGCCCGTAAGAAGCAGCAGCAGTTGTTGGAGCAACAAGCAAGGGCAGCCGAGGCTCCTGTTTCTACTGAACTTAGAAACGCTACATCAGTTGCAGATCAGGATCAGCGGAAAACATTGAAATTTGGATTCTCTTCTAAAGGTGGCACCTCAAAGAACATTTTTGGTGGAGCCAAAAAGAAACCGAAAGTAGCACCTGTAGCTTCTGTTTTTGGGAACGATAGCGATGATGAATAG | 900 | 42.22 | MDYRGFSSRLETSNPSKGYAREQESLGDDFIDDFRLPINHKPTENVDLDNVEQASLDTQLTSSNVGYRLLQKMGWKGKGLGKNEQGIIEPIKSGMRDPKLGIGKQEEDDFFTAEENIQRKKLDVEVEETEEHAKKREVLAEREEKIQTEVKEIRKVFYCDLCNKQYKLAMEFEAHLSSYDHNHRKRFKEMREMHGSSSRDDRNKREQQREEREMAKFAQIADARKKQQQLLEQQARAAEAPVSTELRNATSVADQDQRKTLKFGFSSKGGTSKNIFGGAKKKPKVAPVASVFGNDSDDE* | 300 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 23870947 | 23875162 | - | CsaV3_1G038040.1 | Csa01g02688 | 517185 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02688 | 299 | MobiDBLite | consensus disorder prediction | 244 | 273 | - | - | |
Csa01g02688 | 299 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - | |
Csa01g02688 | 299 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 159 | 181 | IPR013087 | - | |
Csa01g02688 | 299 | SUPERFAMILY | beta-beta-alpha zinc fingers | 138 | 191 | IPR036236 | - | |
Csa01g02688 | 299 | Coils | Coil | 220 | 240 | - | - | |
Csa01g02688 | 299 | MobiDBLite | consensus disorder prediction | 190 | 214 | - | - | |
Csa01g02688 | 299 | ProSiteProfiles | G-patch domain profile. | 62 | 107 | IPR000467 | GO:0003676 | |
Csa01g02688 | 299 | SMART | G-patch_5 | 60 | 105 | IPR000467 | GO:0003676 | |
Csa01g02688 | 299 | MobiDBLite | consensus disorder prediction | 232 | 283 | - | - | |
Csa01g02688 | 299 | Pfam | Zinc-finger double-stranded RNA-binding | 157 | 184 | IPR022755 | - | |
Csa01g02688 | 299 | PANTHER | FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED | 4 | 299 | - | - | |
Csa01g02688 | 299 | Pfam | G-patch domain | 63 | 103 | IPR000467 | GO:0003676 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02688 | Csa-Chr1:23870947 | Csa02g02765 | Csa-Chr2:24059012 | 2.45E-08 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02688 | - | - | csv:101216939 | 563.918 |