Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02690 ATGACAAGGAAGAAAGTGAAACTTGCTTACATTGCAAATGACTCTGCAAGAAAGGCAACATACAAGAAGAGGAAGAGAGGGCTTATGAAAAAGGTTAGTGAATTAAGCACTCTTTGTGGGATTGAGGCATGTGCAATCATCTTTAGTCCCTATGATTCCCAACCCGAGCTTTGGCCTTCCCCTATTGGCGTCCAGCGCGTTCTTTCCCAGTTCAAGAAGATGCCCGAGATGGAGCAAAGTAAGAAGATGGTGAACCAGGAGACATTTTTGCGACAAAGGATTGCAAAGGCGAACGAGCAATTGAAGAAAATGAGAAAGGACAACCGGGAGAAAGAGATCACACGGTTGATGTTTCAGAGCCTCACCGCTGCAAAGGGACTACATGGTCTTAACATGCTTGATTTGAACGACCTCGGTTGGCTCATTGATCAAAATCTTAAAGATATTACTATACGCATTGACTCTCTTAAAATTAAACCATCTTCTTCACAACCTCAAGCTCAAGTTCAGGCTCAGGCTCAGGCTCCACCGACGCAGCCACAAACTGCGGCATGGCTGATGGAGCTTGTGAGCCCTCAAGATCAAATGGGGTTTGTTGGGGATGATATGCTTTTGCCTTTTGGGGATCAAACTTATAACCATAACAATGCAATGTGGTCTAATGCCTTTTTCCCTTAG 678 44.54 MTRKKVKLAYIANDSARKATYKKRKRGLMKKVSELSTLCGIEACAIIFSPYDSQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANEQLKKMRKDNREKEITRLMFQSLTAAKGLHGLNMLDLNDLGWLIDQNLKDITIRIDSLKIKPSSSQPQAQVQAQAQAPPTQPQTAAWLMELVSPQDQMGFVGDDMLLPFGDQTYNHNNAMWSNAFFP* 226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 23890847 23891951 - CsaV3_1G038060.1 Csa01g02690 517187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02690 225 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 184 - -
Csa01g02690 225 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Csa01g02690 225 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Csa01g02690 225 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Csa01g02690 225 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Csa01g02690 225 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Csa01g02690 225 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Csa01g02690 225 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Csa01g02690 225 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 184 - -
Csa01g02690 225 Coils Coil 87 114 - -
Csa01g02690 225 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Csa01g02690 225 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01622 Csa-Chr1:11853581 Csa01g02690 Csa-Chr1:23890847 2.51E-83 dispersed
Csa01g02690 Csa-Chr1:23890847 Csa03g03505 Csa-Chr3:31387457 4.03E-40 dispersed
Csa01g02690 Csa-Chr1:23890847 Csa06g03095 Csa-Chr6:26520126 6.03E-12 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30796 PF00319 SRF-TF 5.10E-18 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02690 - - csv:101203059 418.698