Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02708 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAGCCTATTTCGGCCGTAAAATTGCTATTGATGCTAGCATGAGTATTTATCAATTTCTTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGAACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGCTATTCAAAGAGAGCAGATGCCACTGAGGACCTAGCAGATGCAATCGAGGTTGGCAACAAGGATGATATTGAGAAATTCAGTAAAAGGACAGTAAAGGTTACAAAGCAGCACAATGATGACTGCAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCACTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGATTTTGGAAGAGCTGAACCTCACCATGGATCAATTTATTGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATTGGGGGGCTGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAGAGTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCAGATGATTGGCCTTATAAAGAGGCTCGACAGCTTTTCAAAGAACCACTAGTATGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGACGAAGAAGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAGAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCTGTTACTAATCCTTCAGTATCCATTAAACGAAAGGTAAACAAATGTGTACTTAGGTCTCCCAAACCAGGAGCCCAACATAAATTCTCCTTACAAGCATTTTATTTTTCAAGGTCAAAGGTCATTGGCAGCCTAGGCATGTCAATGTTAGACCATTCGTCCAAGTACTCTGGGTCAGGCCCATTAGTTATGGCTGCATGCTTCAGCACATAA 1254 42.19 MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVNKCVLRSPKPGAQHKFSLQAFYFSRSKVIGSLGMSMLDHSSKYSGSGPLVMAACFST* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24023007 24036367 + CsaV3_1G038240.1 Csa01g02708 517205

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02708 417 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Csa01g02708 417 PANTHER FLAP ENDONUCLEASE 1 1 376 - -
Csa01g02708 417 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Csa01g02708 417 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 376 IPR006084 -
Csa01g02708 417 CDD PIN_FEN1 4 332 - -
Csa01g02708 417 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Csa01g02708 417 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Csa01g02708 417 SMART xpgineu 147 219 IPR006086 GO:0004518
Csa01g02708 417 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Csa01g02708 417 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Csa01g02708 417 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Csa01g02708 417 SMART xpgn3 1 108 IPR006085 GO:0004518
Csa01g02708 417 Gene3D - 10 222 - -
Csa01g02708 417 SMART 53exo3 29 299 IPR002421 GO:0003677
Csa01g02708 417 CDD H3TH_FEN1-Euk 222 289 - -
Csa01g02708 417 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Csa01g02708 417 Gene3D - 223 286 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02708 K04799 FEN1, RAD2; flap endonuclease-1 [EC:3.1.-.-] - csv:101204273 714.531
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02277 Csa-Chr1:19922297 Csa01g02708 Csa-Chr1:24023007 4.25E-18 dispersed
Csa01g02708 Csa-Chr1:24023007 Csa03g03912 Csa-Chr3:34301396 1.71E-12 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g3 . . Bda07g01347 . Bpe11g01422 . . . . . . . . . . . . Bhi02g02245 . . . . . . . . . . . . . . . Cone5ag0114 Cone1ag1592 Lsi06g00010 . Chy08g01102 . . . Bda01g01672 . . . Bma01g00643 . . . . . . . Car11g00987 . . . . . . . . . Cla03g01720 Cam03g1810 Cec03g1856 Cco03g1863 Clacu03g1830 Cmu03g2379 Cre03g2059 . Csa01g02708 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g02770 . 107 802 Core DNA Replication Machinery Family AT4G14700 65.9 1.7e-269 925.6
Csa06g03859 . 83 557 Core DNA Replication Machinery Family AT4G14700 62.1 9.4e-172 600.9
Csa03g02770 . 107 802 Core DNA Replication Machinery Family AT4G12620 67.8 4.4e-278 954.1
Csa06g03859 . 83 557 Core DNA Replication Machinery Family AT4G12620 64.7 3.2e-180 629.0
Csa02g01983 . 2 360 Core DNA Replication Machinery Family AT2G37560 65.2 6.3e-141 497.3
Csa05g00861 . 9 418 Core DNA Replication Machinery Family AT2G01120 65.2 7.7e-157 550.4
Csa06g00062 . 3 417 Core DNA Replication Machinery Family AT4G29910 57.1 1.5e-131 466.8
Csa02g00864 . 1 274 Core DNA Replication Machinery Family AT1G26840 63.6 8.3e-91 330.5
Csa07g01193 . 4 799 Core DNA Replication Machinery Family AT1G79150 59.1 2.3e-245 845.5
Csa03g02982 . 12 939 Core DNA Replication Machinery Family AT1G44900 75.7 0.0e+00 1347.4
Csa06g03777 . 1 575 Core DNA Replication Machinery Family AT5G46280 80.5 1.4e-267 918.7
Csa07g00021 . 1 845 Core DNA Replication Machinery Family AT2G16440 75.2 0.0e+00 1154.0
Csa02g00251 . 1 736 Core DNA Replication Machinery Family AT2G07690 78.5 0.0e+00 1115.9
Csa06g03933 . 7 840 Core DNA Replication Machinery Family AT5G44635 71.7 0.0e+00 1189.5
Csa07g01905 . 4 722 Core DNA Replication Machinery Family AT4G02060 84.7 0.0e+00 1214.5
Csa06g01433 . 38 504 Core DNA Replication Machinery Family AT2G29680 61.5 4.2e-162 568.2
Csa06g01433 . 5 465 Core DNA Replication Machinery Family AT1G07270 55.8 2.3e-138 489.2
Csa07g01526 . 1 594 Core DNA Replication Machinery Family AT3G25100 76.2 1.2e-256 882.5
Csa03g03246 . 12 792 Core DNA Replication Machinery Family AT3G09660 73.1 0.0e+00 1098.2
Csa07g00576 . 10 642 Core DNA Replication Machinery Family AT2G14050 77.6 5.4e-287 983.4
Csa02g01390 . 18 420 Core DNA Replication Machinery Family AT2G20980 55.9 1.6e-116 416.4
Csa04g01776 . 7 180 Core DNA Replication Machinery Family AT1G77320 71.3 8.0e-72 269.2
Csa02g00004 . 1 141 Core DNA Replication Machinery Family AT1G77320 56.0 6.0e-43 173.3
Csa04g02777 . 2 146 Core DNA Replication Machinery Family AT1G77320 52.4 4.4e-38 157.1
Csa07g02169 . 1 201 Core DNA Replication Machinery Family AT1G80190 68.5 1.1e-76 283.1
Csa04g00968 . 1 145 Core DNA Replication Machinery Family AT3G12530 71.7 1.8e-60 228.8
Csa06g00183 . 5 190 Core DNA Replication Machinery Family AT1G19080 67.2 5.9e-69 257.3
Csa06g00183 . 5 190 Core DNA Replication Machinery Family AT3G55490 67.2 5.9e-69 257.3
Csa03g00879 . 1 164 Core DNA Replication Machinery Family AT5G49010 62.7 8.2e-50 193.7
Csa02g01434 . 1 1545 Core DNA Replication Machinery Family AT5G67100 60.0 0.0e+00 1746.1
Csa01g00615 . 26 649 Core DNA Replication Machinery Family AT1G67630 61.9 1.5e-217 752.7
Csa06g00817 . 20 466 Core DNA Replication Machinery Family AT1G67320 64.5 3.2e-183 638.3
Csa05g03138 . 7 451 Core DNA Replication Machinery Family AT5G41880 65.8 1.3e-178 622.9
Csa06g02735 . 1 1091 Core DNA Replication Machinery Family AT5G63960 78.3 0.0e+00 1726.5
Csa03g03577 . 1 438 Core DNA Replication Machinery Family AT2G42120 74.7 2.1e-202 701.8
Csa06g00817 . 20 466 Core DNA Replication Machinery Family AT1G67320 64.5 3.2e-183 638.3
Csa05g00569 . 1 126 Core DNA Replication Machinery Family AT1G09815 61.1 2.3e-37 151.8
Csa06g01291 . 1 2096 Core DNA Replication Machinery Family AT1G08260 71.2 0.0e+00 2980.7
Csa06g01291 . 25 2203 Core DNA Replication Machinery Family AT2G27120 67.6 0.0e+00 2940.6
Csa01g02219 . 7 486 Core DNA Replication Machinery Family AT5G22110 68.7 6.8e-189 657.1
Csa06g02480 . 1 921 Core DNA Replication Machinery Family AT5G22010 63.8 6.4e-310 1060.1
Csa03g00353 . 1 332 Core DNA Replication Machinery Family AT1G63160 90.7 6.0e-173 603.6
Csa04g02134 . 1 355 Core DNA Replication Machinery Family AT5G27740 84.2 5.6e-177 617.1
Csa04g01779 . 1 331 Core DNA Replication Machinery Family AT1G21690 81.9 9.9e-152 533.1
Csa06g02139 . 1 364 Core DNA Replication Machinery Family AT1G77470 76.1 4.8e-155 544.3
Csa02g00027 . 26 618 Core DNA Replication Machinery Family AT2G06510 68.0 1.0e-250 862.8
Csa03g00107 . 32 705 Core DNA Replication Machinery Family AT2G06510 51.0 3.7e-200 694.9
Csa01g00297 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.6 8.1e-245 843.2
Csa03g00107 . 10 814 Core DNA Replication Machinery Family AT5G45400 52.4 1.7e-235 812.8
Csa01g00297 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.9 1.4e-239 825.9
Csa03g00107 . 5 800 Core DNA Replication Machinery Family AT4G19130 54.2 1.3e-229 793.1
Csa01g02708 . 1 404 Core DNA Replication Machinery Family AT5G26680 82.2 4.8e-188 654.1
Csa03g01027 . 1 1103 Core DNA Replication Machinery Family AT1G08840 53.0 1.6e-301 1032.3
Csa04g00346 . 1 298 Core DNA Replication Machinery Family AT2G25100 67.8 1.5e-116 416.0
Csa06g01233 . 1 802 Core DNA Replication Machinery Family AT1G08130 66.7 1.3e-298 1022.3
Csa06g01233 . 201 802 Core DNA Replication Machinery Family AT1G49250 69.2 3.1e-242 834.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006601 1 2 1 1 1 1 1 1 1 1 1 1 1 1 0 2 1 2 1 1 1 1 1 2 2 1 1 3 2 1 37