Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02708 ATGGGCATCAAGGGTTTAACCAAGCTTTTAGCTGATAATGCCCCCAAGGGCATGAAGGAGCAGAAGTTCGAAGCCTATTTCGGCCGTAAAATTGCTATTGATGCTAGCATGAGTATTTATCAATTTCTTATTGTTGTGGGTAGAAGTGGGACTGAGATGCTCACCAACGAAGCTGGTGAAGTCACTAGCCATTTGCAAGGGATGTTTAACCGAACAATAAGGCTTCTCGAAGCTGGAATTAAGCCAGTCTATGTCTTTGATGGAAAGCCTCCTGATTTGAAAAAACAAGAACTTGCAAAACGCTATTCAAAGAGAGCAGATGCCACTGAGGACCTAGCAGATGCAATCGAGGTTGGCAACAAGGATGATATTGAGAAATTCAGTAAAAGGACAGTAAAGGTTACAAAGCAGCACAATGATGACTGCAAAAGACTTTTGAGACTCATGGGAGTGCCTGTGATCGAGGCTCCCTCGGAAGCTGAGGCACAATGTGCTGCACTTTGCAAGTTAGGAAAGGTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTCACTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGATTTTGGAAGAGCTGAACCTCACCATGGATCAATTTATTGATTTGTGCATTCTTTCTGGATGTGATTATTGTGACAATATCCGAGGTATTGGGGGGCTGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAGAGTATATTAGAGAACATAAATAAAGAGAGGTACCAAATTCCAGATGATTGGCCTTATAAAGAGGCTCGACAGCTTTTCAAAGAACCACTAGTATGTACTGACGAAGAGCAACTTGACATTAAGTGGACTACTCCAGACGAAGAAGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAGAGAGTGACAAAGGCAGTAGAAAAAATTAAAGCAGCCAAGAACAAGTCATCACAGGGCCGGATGGAGTCATTTTTCAAGCCTGTTACTAATCCTTCAGTATCCATTAAACGAAAGGTAAACAAATGTGTACTTAGGTCTCCCAAACCAGGAGCCCAACATAAATTCTCCTTACAAGCATTTTATTTTTCAAGGTCAAAGGTCATTGGCAGCCTAGGCATGTCAATGTTAGACCATTCGTCCAAGTACTCTGGGTCAGGCCCATTAGTTATGGCTGCATGCTTCAGCACATAA 1254 42.19 MGIKGLTKLLADNAPKGMKEQKFEAYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKRADATEDLADAIEVGNKDDIEKFSKRTVKVTKQHNDDCKRLLRLMGVPVIEAPSEAEAQCAALCKLGKVYAVASEDMDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVNKCVLRSPKPGAQHKFSLQAFYFSRSKVIGSLGMSMLDHSSKYSGSGPLVMAACFST* 418
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24023007 24036367 + CsaV3_1G038240.1 Csa01g02708 517205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02708 417 ProSitePatterns XPG protein signature 1. 80 94 IPR019974 GO:0016788
Csa01g02708 417 PANTHER FLAP ENDONUCLEASE 1 1 376 - -
Csa01g02708 417 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Csa01g02708 417 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 376 IPR006084 -
Csa01g02708 417 CDD PIN_FEN1 4 332 - -
Csa01g02708 417 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Csa01g02708 417 Pfam XPG N-terminal domain 1 107 IPR006085 GO:0004518
Csa01g02708 417 SMART xpgineu 147 219 IPR006086 GO:0004518
Csa01g02708 417 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Csa01g02708 417 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Csa01g02708 417 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Csa01g02708 417 SMART xpgn3 1 108 IPR006085 GO:0004518
Csa01g02708 417 Gene3D - 10 222 - -
Csa01g02708 417 SMART 53exo3 29 299 IPR002421 GO:0003677
Csa01g02708 417 CDD H3TH_FEN1-Euk 222 289 - -
Csa01g02708 417 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Csa01g02708 417 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Csa01g02708 417 Gene3D - 223 286 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02277 Csa-Chr1:19922297 Csa01g02708 Csa-Chr1:24023007 4.25E-18 dispersed
Csa01g02708 Csa-Chr1:24023007 Csa03g03912 Csa-Chr3:34301396 1.71E-12 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02708 K04799 - csv:101204273 714.531