Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02710 ATGGTTTGTGAAGAAGAAACTCTAATCCAAAAGGTTTGTGAATTATATGATGAAATCTCAAGCCTTGAAAGCCTCAAACCTTGTAACAATGTCGACACCCTTTTCACTAAGTTGGTGGTCACGTGCATGTCACCCACCTCCCCTCATTTCCATATCAATTCACTCTCAAAACCACTTCAACAAATGAGATCAAATCTCATTCGTCTCTGTGGTCAAGCTGAGTCTCTTTTGGAGTTTCATTTTTCTGATTTATTGGCCAAATTTGATTCCCCTATCGATCATCTTCATGTCTTCCCTTACTTCTCTAATTACATTAAACTTAGCCTCCTTGAATTCTCTATTCTCCACCGCCATGGCCCCCGTGCGCTTCCTTCCGCCGTTGCGTTCGTTGGCTCTGGCCCTCTTCCTCTTACCTCCGTCGTCCTTGCCACTCGCCACCTCACCTCCACCGTCTTCCACAACTACGACCTCGACCCGGTTGCTAATTCCAAGGCGTCAAATTTGGTGTCGCGTGACCCGGACCTGAAGACGAGGATGGTGTTTCATACGTGCGACATCATGAAAGTGACAGAGGAGCTAAAACAGTACGAAGTTGTGTTTTTGGCAGCTCTTGTTGGAATGGAGAAGGAGGAAAAACTAAAGGTGATCAAGCATTTGTCAGAGTACATGTCAGAAGGAGCTTATTTGATGGTAAGAAGTGCTCATGGAGGAAGAGCTTTTTTATATCCTGTGGTTGAAGATTCTGATTTGTTAGGGTTTGAGGTTCTATCTGTGTTTCATCCCACTGATGAAGTTATCAACTCAGTAATAATTGCAAGAAAAACAATGAAATTCGATAACGACAACGACAGTGACGACAACAACAACAACGACAACGGTTGTTGTTTGTTTGTTAATTCAGATGAAAATGAGAATGTGAAGATTAGTAGTGGTGTTGTTCATAATAACAAATGTTCTGAGATTCAAAACGGCTTCAATAATCATGGAGGTAAGATTGAGGAATTTGCAATGGAAGCAGCTGAATAA 1026 42.2 MVCEEETLIQKVCELYDEISSLESLKPCNNVDTLFTKLVVTCMSPTSPHFHINSLSKPLQQMRSNLIRLCGQAESLLEFHFSDLLAKFDSPIDHLHVFPYFSNYIKLSLLEFSILHRHGPRALPSAVAFVGSGPLPLTSVVLATRHLTSTVFHNYDLDPVANSKASNLVSRDPDLKTRMVFHTCDIMKVTEELKQYEVVFLAALVGMEKEEKLKVIKHLSEYMSEGAYLMVRSAHGGRAFLYPVVEDSDLLGFEVLSVFHPTDEVINSVIIARKTMKFDNDNDSDDNNNNDNGCCLFVNSDENENVKISSGVVHNNKCSEIQNGFNNHGGKIEEFAMEAAE* 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24042009 24044333 - CsaV3_1G038260.1 Csa01g02710 517207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02710 341 Gene3D Vaccinia Virus protein VP39 6 276 IPR029063 -
Csa01g02710 341 PANTHER NICOTIANAMINE SYNTHASE 3 4 300 IPR004298 GO:0030410|GO:0030418
Csa01g02710 341 Pfam Nicotianamine synthase protein 5 276 IPR004298 GO:0030410|GO:0030418
Csa01g02710 341 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 1 279 IPR004298 GO:0030410|GO:0030418
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02710 Csa02g00501 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02710 Csa-Chr1:24042009 Csa02g00502 Csa-Chr2:3536310 1.91E-127 dispersed
Csa01g02140 Csa-Chr1:18593279 Csa01g02710 Csa-Chr1:24042009 8.78E-102 transposed
Csa01g02710 Csa-Chr1:24042009 Csa02g00501 Csa-Chr2:3524496 3.14E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02710 K05953 - csv:101218907 662.529