Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02727 ATGATCGAACAGGCGATGAAGCACTTGTTCTTGAAGTTCAATAAACTAACAAAGTCACTAACTCCTAAGAAATGGAGAAACTCTGAAAATGCTTCTGTTGTAAGTGGAAGAGAATCTGCAGAAGCAATGGCAAAGTCTGCTAAGAAGAAGGATCTGATCATCCATGGTTCCGGGAGTATAAATATTGATGGTTCGAGCAATTTTGTCTCGAGTTTTTCAAAGAGGGGTGAGAAAGGAATCAATCAGGACTGCTGCATTGTGTGGGAGGAATTTGGGTGTCAAAAAGATATGATATTTTGTGGGGTTTTTGATGGCCATGGACCATGGGGGCATTTTGTTGCAAAAGAGGTTAGAGAGTCAATGCCAATTGCTCTACTTTGCAATTGGGAAGAAGCACTTGTTCAAACTTCTCTTCTTCACCCACATTTGGAACTCAACTCAACAAAAACAAATTTACACTTCAATTTGTGGGAGCGTTCTTATATAGAAGCATGTGCTGTGGTCGATCCAGAACTTGAGCGACATCCTAAAATCGACACATTTCATAGCGGAACAACGGCCCTTTCCATTGTTCGACAAGGTGAAACAATTGTCATTGCAAACCTTGGCGACTCTCGAGCCGTGTTGGCTACAAGTTCTAATGATGGAAATTCAATGTTGTCACCCATTCAGCTCACTATCGATTTCAAGCCAAATCTACCTCAAGAGGCTGAGAGGATAACACAATGCAATGGGAGGGTTTTTTGCTTGCAAGATGAACCAGGGACTCAACGTCTTTGGTTGCCGAATGGGAAAATGCCAGGACTATCAATATCGAGATCGTTTGGCGATTTCTGCTTTAAGCATTTTGGACTTATTTCCATGTCTGATGTAACACAAAGAAGTGTAACCAATAAAGACTTATTTGTTATACTTGCAACTGATGGGATATGGGACGTGGTCTCGAATCAAGAAGCTGTGCAGATCGTACATTCGACGATAGATCGAAAAAAGTCAGCTCGACGATTGGTTGATTATGCAACTTGTGCATGGAAGCGGAAGAGGCCTAGAATTGCAATGGATGATATGTCAGTAATTGTCCTTTACCTCCATTCTTCACCCTTGCATCAATAA 1113 41.51 MIEQAMKHLFLKFNKLTKSLTPKKWRNSENASVVSGRESAEAMAKSAKKKDLIIHGSGSINIDGSSNFVSSFSKRGEKGINQDCCIVWEEFGCQKDMIFCGVFDGHGPWGHFVAKEVRESMPIALLCNWEEALVQTSLLHPHLELNSTKTNLHFNLWERSYIEACAVVDPELERHPKIDTFHSGTTALSIVRQGETIVIANLGDSRAVLATSSNDGNSMLSPIQLTIDFKPNLPQEAERITQCNGRVFCLQDEPGTQRLWLPNGKMPGLSISRSFGDFCFKHFGLISMSDVTQRSVTNKDLFVILATDGIWDVVSNQEAVQIVHSTIDRKKSARRLVDYATCAWKRKRPRIAMDDMSVIVLYLHSSPLHQ* 371
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 24177025 24179025 + CsaV3_1G038430.1 Csa01g02727 517224
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02727 370 Pfam Protein phosphatase 2C 139 340 IPR001932 -
Csa01g02727 370 Gene3D - 61 365 IPR036457 -
Csa01g02727 370 SUPERFAMILY PP2C-like 67 364 IPR036457 -
Csa01g02727 370 CDD PP2Cc 67 363 IPR001932 -
Csa01g02727 370 PANTHER ALPHABET, ISOFORM E-RELATED 6 368 - -
Csa01g02727 370 ProSiteProfiles PPM-type phosphatase domain profile. 68 363 IPR001932 -
Csa01g02727 370 SMART PP2C_4 59 361 IPR001932 -
Csa01g02727 370 PANTHER CATALYTIC/PROTEIN PHOSPHATASE TYPE 2C 6 368 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02727 Csa-Chr1:24177025 Csa06g01776 Csa-Chr6:15614294 1.56E-125 dispersed
Csa01g02727 Csa-Chr1:24177025 Csa02g00474 Csa-Chr2:3366498 2.91E-172 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02727 - - csv:101205485 736.102