Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02730 ATGAGTCAGACAGAAGTATCAAGGATAAAGACCCCTCTCGTTCCACTCGCTACTTTGATCGGTCGCGAGTTGAGGAACGAGAAGGTTGAGAAACCATTTGTGAAGTATGGACAGGCTGCTTTGGCTAAGAAAGGAGAGGACTACTTTCTGATCAAACCTGACTGCCAGCGTATTCCTGGGAACCCTTCCACTGCATTTTCTGTCTTTGCGATTTTTGATGGACATAATGGCATTTCAGCCGCTATTTTTGCAAAGGAACATTTATTGGAAAATGTCCTAAGTGCAATTCCTCAAGGGGCCAATAGAGAAAAATGGCTTCAGGCTCTTCCCCGAGCACTAGTTGCTGGTTTTGTTAAAACTGACATAGAGTTTCAGCAGAAAGGGGAAACTTCTGGGACTACTGTTACATTTGTTGTGATTGATGGGTGGACTGTTACTGTTGCTTCTGTGGGAGATTCACGGTGCATATTAGACACCCAAGGAGGTGTGGTTTCTCTATTGACAGTTGATCATCGGCTGGAGGAAAATGAGGAAGAGAGGGAACGTGTAACTGCAAGTGGTGGTGAGGTTGGGAGGCTCAATGTTTTTGGCGGGAATGAGGTTGGTCCTCTTCGCTGCTGGCCTGGTGGCTTATGTCTTTCTAGGTCCATTGGTGATACAGATGTAGGAGAATATATTGTCCCAATACCACATGTTAAGCAAGTGAAGCTTTCTAATGCTGGTGGAAGGCTAATTATTGCTTCTGATGGTATTTGGGATGCATTATCGTCTGAAATGGCTGCAAAGTCTTGCCGGGGATTACCTGCAGAGCTTGCTGCCAAGCTGGTTGTGAAGGAAGCTTTACGGTCAAGGGGGTTGAAGGATGATACAACTTGCTTAGTTGTTGATATTATCCCATCTGAGCAACCTTTTTTAATACCATCAACTCCAAGGAAGAAGCAAAATGTGCTTACCTCATTCTTTGGGAAGAAATATCCAAACTCTTTGGGTAAATCTGCTAACAAACTTTCAGCTGTTGGTGTTGTAGAGGAATTGTTTGAAGAAGGTTCTGCTATGCTTGCTGAAAGGCTAGGCAAAGATTTTCCCTCAGATCCAAACTCAGGGATCTTCAAATGTGCAGTCTGTCAAGCTGATCAACCCCCAAACGAAAATTTGTCAATGAACTCAGGACCTTTCTTTTCACCGTCATCGAAGCCATGGGAAGGTCCATTCCTCTGTGCAACTTGTCGAAAAAAGAAAGACGCCATGGAAGGAAAAAGGCCAATAAAACCTACAATAACCGTTTAG 1287 44.13 MSQTEVSRIKTPLVPLATLIGRELRNEKVEKPFVKYGQAALAKKGEDYFLIKPDCQRIPGNPSTAFSVFAIFDGHNGISAAIFAKEHLLENVLSAIPQGANREKWLQALPRALVAGFVKTDIEFQQKGETSGTTVTFVVIDGWTVTVASVGDSRCILDTQGGVVSLLTVDHRLEENEEERERVTASGGEVGRLNVFGGNEVGPLRCWPGGLCLSRSIGDTDVGEYIVPIPHVKQVKLSNAGGRLIIASDGIWDALSSEMAAKSCRGLPAELAAKLVVKEALRSRGLKDDTTCLVVDIIPSEQPFLIPSTPRKKQNVLTSFFGKKYPNSLGKSANKLSAVGVVEELFEEGSAMLAERLGKDFPSDPNSGIFKCAVCQADQPPNENLSMNSGPFFSPSSKPWEGPFLCATCRKKKDAMEGKRPIKPTITV* 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24189935 24193524 - CsaV3_1G038460.1 Csa01g02730 517227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02730 428 ProSiteProfiles PPM-type phosphatase domain profile. 32 297 IPR001932 -
Csa01g02730 428 PANTHER ALPHABET, ISOFORM E-RELATED 2 427 - -
Csa01g02730 428 Pfam Protein phosphatase 2C 61 280 IPR001932 -
Csa01g02730 428 CDD PP2Cc 43 297 IPR001932 -
Csa01g02730 428 PANTHER PROTEIN PHOSPHATASE 2C 5-RELATED 2 427 - -
Csa01g02730 428 SMART PP2C_4 23 295 IPR001932 -
Csa01g02730 428 SMART PP2C_SIG_2 51 297 IPR001932 -
Csa01g02730 428 Gene3D - 37 302 IPR036457 -
Csa01g02730 428 SUPERFAMILY PP2C-like 43 297 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02730 Csa-Chr1:24189935 Csa05g02632 Csa-Chr5:27433334 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02730 - - csv:101219622 853.588