Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02737 ATGACGTCTCGTGATTCCTCCGGTTCCGACAATGGCCTATTACCTCTTACTGTTTCCACTTCCAGCCGACGTCACGATGTTGAGTCTGGACTCTCCTCCGGCGAAAGCATTGACGAGGAGAAAGAAGAGGGTGTATCGGATTCCTTCGACATTGACAACACCAAAAATGTCCCTCTACAGATACTCAAGCGATGGTGGCAAGCTGCATCGGTGCTTAATGCCTCTTGGAGATTTCGATATACTTTGGACTTAAAAAAGGAGGAAGAGAAAGAACGAAGGAGGTGGATGATTAGAGCGCATGTACAAGTGATAAGGGCAACGCTGCTTTTCAAATTGGCAGGGGAACAACAAATTTGTTCATCAGTATCACCTCCACTGTCAAGTAGTGACTATTACATTAGTTTGGAACAACTTGCTTCATTGACTCGTGATCAAAACTTGTCTTCTTTACAACAGCATGGAGGAGTTAAAGGCTTATCAAATTTGTTGACAACAGTACCGAGAAAGGAATATCAGGAGATGAAACTGATTTGCTTAACAGAAGAAACGCATTTGGATCAAATAAGTATCCAAGAAGGTTGGCAAGATTTAACCTTAATCATCTTGATCATAGCTGGAGAGGGTGTGGGTATTAAAACAGAGGGTGTAGAGGAAGGATGGTATGATGGAGAAAGTATTGGCTTTGCTGTGTTTCTTGTCATAATGGTCACAGCGATTAGTGATTATCAAAAGTCCCTTCAGGTTCAGAATTTAAATGAGAAAAAGCAGAACATATACAAATCCTTACTTGATGGAATATTGATCACTGGGCATTCACTTGCCATAGATGAATCTAGCAATATGACAGGCGAAAGTAAGATTGTTCGAAAGGAGCAGAAGGCACCCTTTTTGATGTCTAGTTGTAAGGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCCGTTGGAATCAATACTGAATGGGGATTGTTGATGGCAAGTATCTCAGAGGATACTGGGGAAGAAACTCCCTTGCAGGTCCGGTTGAATGGAGTTGCAACTTTCATCGGCATAGTTGGGCTTGCAGTTGCAATTTCTGTGCTAGCCATCCTTTTGGGCAGATACTTCACGGGAAATACACACGATGCAAATGGGAACCCTCCATTTCGGCGTGGCCATACGAGTCAAAGTGATGCTGTCAAATGGAGTTATTAA 1194 42.8 MTSRDSSGSDNGLLPLTVSTSSRRHDVESGLSSGESIDEEKEEGVSDSFDIDNTKNVPLQILKRWWQAASVLNASWRFRYTLDLKKEEEKERRRWMIRAHVQVIRATLLFKLAGEQQICSSVSPPLSSSDYYISLEQLASLTRDQNLSSLQQHGGVKGLSNLLTTVPRKEYQEMKLICLTEETHLDQISIQEGWQDLTLIILIIAGEGVGIKTEGVEEGWYDGESIGFAVFLVIMVTAISDYQKSLQVQNLNEKKQNIYKSLLDGILITGHSLAIDESSNMTGESKIVRKEQKAPFLMSSCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLAVAISVLAILLGRYFTGNTHDANGNPPFRRGHTSQSDAVKWSY* 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24260554 24261881 + CsaV3_1G038530.1 Csa01g02737 517234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02737 397 MobiDBLite consensus disorder prediction 376 397 - -
Csa01g02737 397 Pfam E1-E2 ATPase 263 366 - -
Csa01g02737 397 PANTHER CALCIUM-TRANSPORTING ATPASE 264 392 - -
Csa01g02737 397 PANTHER CALCIUM-TRANSPORTING ATPASE 30 259 - -
Csa01g02737 397 MobiDBLite consensus disorder prediction 1 27 - -
Csa01g02737 397 MobiDBLite consensus disorder prediction 1 49 - -
Csa01g02737 397 Gene3D - 59 112 - -
Csa01g02737 397 SUPERFAMILY Calcium ATPase, transduction domain A 263 326 IPR008250 -
Csa01g02737 397 Gene3D - 190 392 - -
Csa01g02737 397 PANTHER CATION TRANSPORTING ATPASE 264 392 - -
Csa01g02737 397 PANTHER CATION TRANSPORTING ATPASE 30 259 - -
Csa01g02737 397 SUPERFAMILY Calcium ATPase, transmembrane domain M 198 374 IPR023298 -
Csa01g02737 397 Pfam Ca2+-ATPase N terminal autoinhibitory domain 47 89 IPR024750 GO:0005516
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02737 Csa-Chr1:24260554 Csa07g02289 Csa-Chr7:21300958 0 dispersed
Csa01g02737 Csa-Chr1:24260554 Csa06g03028 Csa-Chr6:26063517 1.88E-46 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02737 K01537 - csv:101214801 548.125