Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02746 ATGTCAAGAGTTTCTTTAGCCATTCATATTTTTATGTTGATCTTTTTGCCTGTGTTACAAGTTTCCTGCTTTGATGTTAATGTTATTTACCCAGATGAACAAAATAATGTTACACAGTCCATGATTTCTCAGATTTGTGCTGATATCGAAGATCGAAATTCATGCATTTCAAACATACAACTTGAGATGGGAAGAAGTGTGAACTCGAATCCAAATTCTGTCTTGAGTGCTGCAATTAGAGCAACTATTAATGAAGCTAGACGAGCCATAGAGTCTATAACAAAGTTCAGCACATTCTCGTTTAGCTACCGTGAAGAAATGGCAATTGAGGACTGCAAGGAGCTTCTTGATTTCTCTGTGGCAGAGCTGGCATGGTCATTAGCTGAGATGAAAAGGATTCGTGCAGGCAAAAACGAAGCTCCCGACGAAGGGAATCTAAAAGCATGGCTAAGCGCCGCTCTCAGCAACCAAGACACATGCCTTGAAGGCTTTGAAGGCACAGACAGGCACATTGTAGGTTTCATTAGAGGTAGTTTGAAGCAAGTTACACTGCTCATTAGCAATGTCTTGGCATTGTACACTCAATTACACAGCTTACCATTTCAACCCCCACGGAATGAAACGATGGAGAAAACTAAAAGTTCGGAGTTTCCAGATTGGATGATGGATAGCGAGCACAAGATTGTGAAATCTCATCCACGTAACGTCCACGTTGATGCAATCGTGGCTTTGGATGGAAGCGGAGATTTCCGTTCTATCACAGAAGCTGTAAATGAAGCTCCAAGTTATAGCAATAGAAGGTACATCATATATGTGAAGAAGGGAGTCTACAAAGAAAATATCGACATGAAGCGAAAGAAAACGAACATAATGTTTATTGGAGATGGTATCGGAGAAACAATAGTGACCGGAAGTCGTAATTTTCTGCAGGGATGGACTACTTTCAGAACTGCAACTGTTGCTGTCTCTGGGAAGGGATTCATAGCAAGAGATATGACATTTCGCAACACGGCTGGACCAGAAAACCATCAGGCAGTGGCACTCCGTGTCGACTCTGATCAGTCAGCCTTCTTCCGGTGCAGCTTCGAAGGTCATCAAGACACCCTTTACGTCCACTCCCTCCGCCAATTTTACAGGGAATGCAACATATACGGCACCATAGACTACATTTTCGGCAACGGGGCAGCAGTATTCCAAAAATGCAACATCTACACCAGAGTTCCTCTCCCACTCCAGAAGGTCACAATCACCGCACAAGGTCGAAAATCTCCACACCAGAGTACAGGTTTTTCAATCCAAGACAGCTTTATTTATGCAACTCAACCAACATATCTTGGAAGACCATGGAAGCTATATTCAAGGACTGTCTTCTTGAACACTTACATGAGTGGTTTGGTACAACCTAGAGGATGGCTTGAGTGGTATGGCAATTTTGCTTTAGGCACATTGTGGTATGGAGAGTATAAAAACTATGGACCTGGTGCATCCCTATCAGGTCGAGTCAAATGGCCTGGGTACCATAATATTCAAGACCCTACCATGGCTAGATTCTTCACCTCCGAGCACTTCATCGACGGTCGAACATGGTTGCCAAAGACGGGTATTAAGTTCACATTGGGATTGAGTAACTAA 1632 43.14 MSRVSLAIHIFMLIFLPVLQVSCFDVNVIYPDEQNNVTQSMISQICADIEDRNSCISNIQLEMGRSVNSNPNSVLSAAIRATINEARRAIESITKFSTFSFSYREEMAIEDCKELLDFSVAELAWSLAEMKRIRAGKNEAPDEGNLKAWLSAALSNQDTCLEGFEGTDRHIVGFIRGSLKQVTLLISNVLALYTQLHSLPFQPPRNETMEKTKSSEFPDWMMDSEHKIVKSHPRNVHVDAIVALDGSGDFRSITEAVNEAPSYSNRRYIIYVKKGVYKENIDMKRKKTNIMFIGDGIGETIVTGSRNFLQGWTTFRTATVAVSGKGFIARDMTFRNTAGPENHQAVALRVDSDQSAFFRCSFEGHQDTLYVHSLRQFYRECNIYGTIDYIFGNGAAVFQKCNIYTRVPLPLQKVTITAQGRKSPHQSTGFSIQDSFIYATQPTYLGRPWKLYSRTVFLNTYMSGLVQPRGWLEWYGNFALGTLWYGEYKNYGPGASLSGRVKWPGYHNIQDPTMARFFTSEHFIDGRTWLPKTGIKFTLGLSN* 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24347384 24349601 + CsaV3_1G038620.1 Csa01g02746 517243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02746 543 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 197 IPR035513 -
Csa01g02746 543 ProSitePatterns Pectinesterase signature 1. 264 283 IPR018040 -
Csa01g02746 543 CDD PMEI-like_4 69 196 - -
Csa01g02746 543 Gene3D - 234 541 IPR012334 -
Csa01g02746 543 Pfam Pectinesterase 239 526 IPR000070 GO:0030599|GO:0042545
Csa01g02746 543 Gene3D Invertase/pectin methylesterase inhibitor family protein 38 197 IPR035513 -
Csa01g02746 543 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22-RELATED 10 540 - -
Csa01g02746 543 Pfam Plant invertase/pectin methylesterase inhibitor 41 192 IPR006501 GO:0004857
Csa01g02746 543 SUPERFAMILY Pectin lyase-like 238 540 IPR011050 -
Csa01g02746 543 PANTHER PECTINESTERASE 10 540 - -
Csa01g02746 543 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Csa01g02746 543 TIGRFAM PME_inhib: pectinesterase inhibitor domain 6 197 IPR006501 GO:0004857
Csa01g02746 543 SMART PMEI_2 37 192 IPR006501 GO:0004857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02746 Csa-Chr1:24347384 Csa03g00005 Csa-Chr3:181308 6.06E-170 dispersed
Csa01g02746 Csa-Chr1:24347384 Csa03g01994 Csa-Chr3:15703537 3.11E-147 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02746 K01051 - csv:101202977 1105.89