Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02747 ATGGGTTATAAGGATGATGATTCTCAAAACAAAAAAAGATACGCCATCATTGGTGTGTCGTCAATGTTACTAGTGGCTATGGTGGTGGCGGTGACGGTTGGTGTTAACCTAAACCAGGATGAGACAAGTGATCCAGCTACTGGAAATAAGTCTCATGAAATATCTTCTTCAATGAAAGCTATTAAAGCCATTTGTCAACCTACTGATTACAAACAAGAATGTGTTGCTAGTCTTAAGGCTACTGGCAACAATTCTTCAGATCCAAAGGAATTGGTTCAAGCTGGTTTTAAGGCTGCCATGAAGTTGATCCAAGCTGCTGCTAATAAATCTGTCGCCTTGAATCAGCTTGAGAAAGATCCTAGAGCCTCCAAAGCCCTTGCTGGTTGTAAAGAGCTCATGGATTTCGCCATTGATGAGCTTAAATACTCCATGAACAAACTCGGAGAGTTTGATATTAGTAAACTCGATGAGATGTTGATCGATATTAGGATTTGGCTCAGTGCTACAATTACTTATCAGGAAACTTGCTTGGATGGGTTCGCAAACACAACAGGAAATGCAGCAGAGAAGATGAAGAAGGCATTGAAGACTTCAATGAAGTTGAGTAGCAACGGGTTGGCGATGGTGTCGCAGATCTCGTCGATGTTGTCAGAGTTGCAGATTCCAGGGATTAGCCGAAGGCGACTTCTCGAGATTCCAGTTCTTGGGCATGATGATTATCCTGACTGGGCGAATCCCGGGATGAGACGACTCCTAGCTGCAGGGTCGAAAGTGAAGCCCAATGTTGTGGTGGCTAAGGATGGGAGTGGTCAATTCAAAACCATTCAAGAGGCTATTGACCAAGTTCCAAAGAGAAAGAACAATGCAACTTATGTGATTCATATCAAGGCCGGAGTGTATCAAGAATATGTACTAGTTAAGAAAACTCTCACTCACTTGATGCTCATTGGTGATGGCCCCAAAAAGACCATTATCACCGGTAACAAGAACTTTATCGATGGCACACCCACTTTCAAAACCGCAACCGTTGCTGTGACAGCAGAGCACTTCATGGCAAGAGACATCGGGTTCGAGAACACGGCAGGACCACAAAAGCACCAAGCCGTCGCACTACGAGTCCAAGCAGACAAAGCCGTATTCTACAACTGCGAAATGCATGGTTACCAAGACACTCTCTACGTACACACCATGCGTCAATTCTACCGTGATTGCACGGTCTCAGGAACCATCGACTTCATCTTCGGCGACGCAGCCGCCATCTTCCAAAGCTGCACCTTCCTAGTTCGCAAGCCGCTACCAAACCAACAATGCATCGTAACAGCACACGGACGCAAAGAGCGCCGTCAACCATCGGCACTCATCATCCAAAACTGTTCGTTCAAGCCCCATGCCGACCTGGTCCCGGTACAAAAGCAATTCCGATCCTTCCTTGGAAGACCATGGAAGGAATATTCAAGAACAATCATAATGGAATCATACATTGGTGATTTGATTCAGCCAGAAGGATGGTTGCCATGGGCAGGTGATTGGGGATTAAGGACATGCTTTTACACAGAGTATAATAATTATGGACCAGGTTCTGATAAATCAAAGAGGGTGAAATGGAGAGGGATTAAGAACATTACACCACAACATGCTGTGGATTTTACTCCTGGCCGGTTCCTTAAGGGGGATAGATGGATTAAGCCCACCGGAGTTCCTTATGTTTCTGGACTGACCAGGACCGGCGGTGCTGGGGCAGCGGCTCATTGA 1752 45.83 MGYKDDDSQNKKRYAIIGVSSMLLVAMVVAVTVGVNLNQDETSDPATGNKSHEISSSMKAIKAICQPTDYKQECVASLKATGNNSSDPKELVQAGFKAAMKLIQAAANKSVALNQLEKDPRASKALAGCKELMDFAIDELKYSMNKLGEFDISKLDEMLIDIRIWLSATITYQETCLDGFANTTGNAAEKMKKALKTSMKLSSNGLAMVSQISSMLSELQIPGISRRRLLEIPVLGHDDYPDWANPGMRRLLAAGSKVKPNVVVAKDGSGQFKTIQEAIDQVPKRKNNATYVIHIKAGVYQEYVLVKKTLTHLMLIGDGPKKTIITGNKNFIDGTPTFKTATVAVTAEHFMARDIGFENTAGPQKHQAVALRVQADKAVFYNCEMHGYQDTLYVHTMRQFYRDCTVSGTIDFIFGDAAAIFQSCTFLVRKPLPNQQCIVTAHGRKERRQPSALIIQNCSFKPHADLVPVQKQFRSFLGRPWKEYSRTIIMESYIGDLIQPEGWLPWAGDWGLRTCFYTEYNNYGPGSDKSKRVKWRGIKNITPQHAVDFTPGRFLKGDRWIKPTGVPYVSGLTRTGGAGAAAH* 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24351481 24353987 + CsaV3_1G038630.1 Csa01g02747 517244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02747 583 TIGRFAM PME_inhib: pectinesterase inhibitor domain 57 212 IPR006501 GO:0004857
Csa01g02747 583 Pfam Plant invertase/pectin methylesterase inhibitor 60 208 IPR006501 GO:0004857
Csa01g02747 583 Gene3D - 254 572 IPR012334 -
Csa01g02747 583 PANTHER PECTINESTERASE 16 574 - -
Csa01g02747 583 ProSitePatterns Pectinesterase signature 1. 287 306 IPR018040 -
Csa01g02747 583 PANTHER PECTINESTERASE 16 574 - -
Csa01g02747 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 213 IPR035513 -
Csa01g02747 583 Pfam Pectinesterase 261 558 IPR000070 GO:0030599|GO:0042545
Csa01g02747 583 CDD PMEI-like_3 63 214 - -
Csa01g02747 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 213 IPR035513 -
Csa01g02747 583 SUPERFAMILY Pectin lyase-like 256 571 IPR011050 -
Csa01g02747 583 SMART PMEI_2 56 208 IPR006501 GO:0004857
Csa01g02747 583 ProSitePatterns Pectinesterase signature 2. 406 415 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02621 Csa-Chr1:23197757 Csa01g02747 Csa-Chr1:24351481 8.46E-146 dispersed
Csa01g02747 Csa-Chr1:24351481 Csa06g01790 Csa-Chr6:15830169 0 dispersed
Csa05g02898 Csa-Chr5:29464400 Csa01g02747 Csa-Chr1:24351481 1.50E-176 transposed
Csa01g02747 Csa-Chr1:24351481 Csa03g01487 Csa-Chr3:11030190 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02747 K01051 - csv:101207393 1142.87