Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02771 ATGGGTTGTGTTTTGAAGTGTGTTTTCATGATTGTTGTCTTCATTTCGATGCCTTTTTCATTGGAGAAATCTCACATTTCGATTGCTAACTCACTGTTGGATGCAACTGAGAGCTTTAGTGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAATGGCGGCAATGAGCCTTTCATTTTGGACAGAGTCAGAGCTCTACTTGGACTTAATAGCTTACAATTGGGAAATCAAAGCCCATCAGATCTTTCGCCTTCGCCATCTCCGTCGCCCTCGCCATCTCCATTCACCATTTCTCCTTCTCCTGCTCCAATGGCAGCTCATCGAGTGCACATTCACGAGCATTCTCATCCTCATCAGCTGCGCTTGCACAAGAGCCGACCAAAATACAAACCGAAAAGAAAAGATCCAAGAGAAGGAAGGGTCAGAAAAATTCTTGTTGCAGTTCTTGTGTCTGTAGGAGTCGCCATTTTGTTGTGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAAGTCAGAGAGAGGAATCCATGGAGAAGCTTTCTGTTAAGAGTGAAAAAGAAGATAAGACAGCAAGACCAAAATCTAGCCTTGATCTGTTCGATCTTGGTAGACTAGGTATGGATGTTGAAGAACAGACTCATACTTCTGAAAGTGAAAAGGAGTTATCTGTTCATAAAGAGGGGGGAAGGAGTGAAGAGATGTTGGATTCAGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATTTGTATCTGAGGGAACTCATTCCTCATCTGGGGATAAGGTTACTCCTGTTCAATGTTGTTCATCTGATGATGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTGTCAAATCGTCGCCTTTCAAATGCTTCGGAAATTTCTTCTGCTAATGTGATAACAAATTCTACTTGTTCAGTACCAACTGTCACCTTAGCAAGTAAATTGGAAACACAATGTGATGAATCTAACAAGTTATTAACTTCTGACCAGTCTCATCTTGCCCTTTTTCCTTGTAATTCAGAACCCAAAATGCAGATGGTTCCCCATTCTGTTGGTTTCCAAAAGAATGCCAATGTCCCATCTTTATCTCCACCTCCACCACCGCCACCGCCGCCTCCTCCTGCAGTCATGGATCGCTGTTCGTTTTCCCTTTCTTCACCCTTTTCAACTGGATCTACTTCTTCTGCATTGTTAAGATCCTCATCTCCGGCATTGTCAGATTCTTCTTCCGTATCTCCTATACCATGGAATGATCTGCCATCACCTCAAACCACTACTAAACCTTCATTACCATCATCTGCTATTCCGCCACCCCCTTCTCCACCACCAATTTTGAAAACAAGCCCTTACTCTTTCAAAACTCCTCCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGTCATTTGGAAAAGAGGCAAATTTAAGGCCAAAACTTAAGCCTCTCCATTGGGACAAAGTAAGAGCTGCACCTGATCAATCAATGGTGTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGATGAAGAAATGATTGAGTCATTATTTGGTTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGTCCTTCTCCAAGCAAGCATATTCTAGAGGCAAAGAGACTTCAGAACCTAACCATTCTCTTAAAAGCCTTAAATCTCTCCACAGAACAAGTTTGTGAAGCCATAGAACAAGGGAATGGGCTGCGTTTGAGACAACTTGAAGCACTGGTGAAGATGGTACCAACACAAGAAGAAGAAGCCAAATTGTTAAGCTATGAAGGAGACATTGGTGAATTGGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATACCATTTGCCTTCCAAAGAGTAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAATCATCTCAGGAACTCATTTTCCATACTAGAGGAGGCCTGCAAGGAATTAAGATCCAGCAGACTCTTCCTAAAACTCCTAGAAGCCGTGTTAAAAACAGGAAACCGAATGAACGTCGGAACAAGCAGAGGAGGCGCACGAGCATTCAAACTCGACGCGCTCCTAAAACTCTCCGACGTCAAAGGCACAGACGGCAAAACATCCCTACTCCACTTCGTAGTACAAGAAATGATCCGGTCAGAAGGGATCAGAGTATCAGGCAGCATAATGGGGAAAATCAACCAAAAAAACAAACCAAGAACAGTTGAAGAACGAGAAAACGATTACCGGAGAATGGGATTGGATTTGGTGTCGGGGTTGAGCACGGAACTGCAGAACGTGAAACGAGCGGCAACGATCGACCTGAAAGTAGTGGGAAGTTCGAGGGGGAATTTGAATGAAGGAATGAGGAAAATGGAGGAATTGGTGGGGAAGGAGTTGAGAGGGAACTTTGGGGAAAGCATGAAAGGGTTTGTGGGGTATGTGAAGAAGAGGATGGAGGAAGTGAAGAAGGATGAGGAAAGAGTATTGGGGAATGTGAGAGAGATTACAGAGTATTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCGTTGAGGATTTTTGTGATCGTTAGAGATTTTCTTGGAATGTTAGATAATGTTTGCAAGAGCTTCAAGATTGGTTGTTGA 2676 42.53 MGCVLKCVFMIVVFISMPFSLEKSHISIANSLLDATESFSVKELERVSGEDENGGNEPFILDRVRALLGLNSLQLGNQSPSDLSPSPSPSPSPSPFTISPSPAPMAAHRVHIHEHSHPHQLRLHKSRPKYKPKRKDPREGRVRKILVAVLVSVGVAILLCSIIAFWVCKKFKSQREESMEKLSVKSEKEDKTARPKSSLDLFDLGRLGMDVEEQTHTSESEKELSVHKEGGRSEEMLDSEFDNVSVSSTKEMMYVHEEDDSKSIQFVSEGTHSSSGDKVTPVQCCSSDDEESFHSCGDSNLSNRRLSNASEISSANVITNSTCSVPTVTLASKLETQCDESNKLLTSDQSHLALFPCNSEPKMQMVPHSVGFQKNANVPSLSPPPPPPPPPPPAVMDRCSFSLSSPFSTGSTSSALLRSSSPALSDSSSVSPIPWNDLPSPQTTTKPSLPSSAIPPPPSPPPILKTSPYSFKTPPPPPSKLPQFMSFGKEANLRPKLKPLHWDKVRAAPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGNGLRLRQLEALVKMVPTQEEEAKLLSYEGDIGELGCTEKFVIAILRIPFAFQRVEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKINQKNKPRTVEERENDYRRMGLDLVSGLSTELQNVKRAATIDLKVVGSSRGNLNEGMRKMEELVGKELRGNFGESMKGFVGYVKKRMEEVKKDEERVLGNVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGC* 892
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24487800 24492230 + CsaV3_1G038870.1 Csa01g02771 517268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02771 891 MobiDBLite consensus disorder prediction 84 100 - -
Csa01g02771 891 SMART it6_source 487 889 IPR015425 -
Csa01g02771 891 MobiDBLite consensus disorder prediction 401 449 - -
Csa01g02771 891 PANTHER FORMIN-LIKE PROTEIN 42 313 - -
Csa01g02771 891 PANTHER FORMIN-LIKE PROTEIN 369 888 - -
Csa01g02771 891 MobiDBLite consensus disorder prediction 373 485 - -
Csa01g02771 891 MobiDBLite consensus disorder prediction 212 239 - -
Csa01g02771 891 Coils Coil 648 668 - -
Csa01g02771 891 MobiDBLite consensus disorder prediction 379 396 - -
Csa01g02771 891 SUPERFAMILY Formin homology 2 domain (FH2 domain) 500 885 - -
Csa01g02771 891 MobiDBLite consensus disorder prediction 450 482 - -
Csa01g02771 891 Gene3D Formin, FH2 domain 483 888 IPR042201 -
Csa01g02771 891 ProSiteProfiles Formin homology-2 (FH2) domain profile. 487 891 IPR015425 -
Csa01g02771 891 MobiDBLite consensus disorder prediction 78 138 - -
Csa01g02771 891 MobiDBLite consensus disorder prediction 112 132 - -
Csa01g02771 891 Pfam Formin Homology 2 Domain 489 880 IPR015425 -
Csa01g02771 891 PANTHER FORMIN-RELATED 369 888 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Csa01g02771 891 PANTHER FORMIN-RELATED 42 313 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02771 Csa-Chr1:24487800 Csa05g00980 Csa-Chr5:8967816 2.60E-124 dispersed
Csa01g02771 Csa-Chr1:24487800 Csa02g01413 Csa-Chr2:13503958 3.84E-130 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02771 - - csv:101208374 1573.91