Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02771 | ATGGGTTGTGTTTTGAAGTGTGTTTTCATGATTGTTGTCTTCATTTCGATGCCTTTTTCATTGGAGAAATCTCACATTTCGATTGCTAACTCACTGTTGGATGCAACTGAGAGCTTTAGTGTTAAAGAGCTAGAGAGAGTTTCAGGGGAAGATGAGAATGGCGGCAATGAGCCTTTCATTTTGGACAGAGTCAGAGCTCTACTTGGACTTAATAGCTTACAATTGGGAAATCAAAGCCCATCAGATCTTTCGCCTTCGCCATCTCCGTCGCCCTCGCCATCTCCATTCACCATTTCTCCTTCTCCTGCTCCAATGGCAGCTCATCGAGTGCACATTCACGAGCATTCTCATCCTCATCAGCTGCGCTTGCACAAGAGCCGACCAAAATACAAACCGAAAAGAAAAGATCCAAGAGAAGGAAGGGTCAGAAAAATTCTTGTTGCAGTTCTTGTGTCTGTAGGAGTCGCCATTTTGTTGTGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAAGTCAGAGAGAGGAATCCATGGAGAAGCTTTCTGTTAAGAGTGAAAAAGAAGATAAGACAGCAAGACCAAAATCTAGCCTTGATCTGTTCGATCTTGGTAGACTAGGTATGGATGTTGAAGAACAGACTCATACTTCTGAAAGTGAAAAGGAGTTATCTGTTCATAAAGAGGGGGGAAGGAGTGAAGAGATGTTGGATTCAGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATTTGTATCTGAGGGAACTCATTCCTCATCTGGGGATAAGGTTACTCCTGTTCAATGTTGTTCATCTGATGATGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTGTCAAATCGTCGCCTTTCAAATGCTTCGGAAATTTCTTCTGCTAATGTGATAACAAATTCTACTTGTTCAGTACCAACTGTCACCTTAGCAAGTAAATTGGAAACACAATGTGATGAATCTAACAAGTTATTAACTTCTGACCAGTCTCATCTTGCCCTTTTTCCTTGTAATTCAGAACCCAAAATGCAGATGGTTCCCCATTCTGTTGGTTTCCAAAAGAATGCCAATGTCCCATCTTTATCTCCACCTCCACCACCGCCACCGCCGCCTCCTCCTGCAGTCATGGATCGCTGTTCGTTTTCCCTTTCTTCACCCTTTTCAACTGGATCTACTTCTTCTGCATTGTTAAGATCCTCATCTCCGGCATTGTCAGATTCTTCTTCCGTATCTCCTATACCATGGAATGATCTGCCATCACCTCAAACCACTACTAAACCTTCATTACCATCATCTGCTATTCCGCCACCCCCTTCTCCACCACCAATTTTGAAAACAAGCCCTTACTCTTTCAAAACTCCTCCTCCTCCTCCTTCCAAGCTCCCTCAATTCATGTCATTTGGAAAAGAGGCAAATTTAAGGCCAAAACTTAAGCCTCTCCATTGGGACAAAGTAAGAGCTGCACCTGATCAATCAATGGTGTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGATGAAGAAATGATTGAGTCATTATTTGGTTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGTCCTTCTCCAAGCAAGCATATTCTAGAGGCAAAGAGACTTCAGAACCTAACCATTCTCTTAAAAGCCTTAAATCTCTCCACAGAACAAGTTTGTGAAGCCATAGAACAAGGGAATGGGCTGCGTTTGAGACAACTTGAAGCACTGGTGAAGATGGTACCAACACAAGAAGAAGAAGCCAAATTGTTAAGCTATGAAGGAGACATTGGTGAATTGGGTTGTACAGAGAAGTTTGTCATAGCAATTCTGAGAATACCATTTGCCTTCCAAAGAGTAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAATCATCTCAGGAACTCATTTTCCATACTAGAGGAGGCCTGCAAGGAATTAAGATCCAGCAGACTCTTCCTAAAACTCCTAGAAGCCGTGTTAAAAACAGGAAACCGAATGAACGTCGGAACAAGCAGAGGAGGCGCACGAGCATTCAAACTCGACGCGCTCCTAAAACTCTCCGACGTCAAAGGCACAGACGGCAAAACATCCCTACTCCACTTCGTAGTACAAGAAATGATCCGGTCAGAAGGGATCAGAGTATCAGGCAGCATAATGGGGAAAATCAACCAAAAAAACAAACCAAGAACAGTTGAAGAACGAGAAAACGATTACCGGAGAATGGGATTGGATTTGGTGTCGGGGTTGAGCACGGAACTGCAGAACGTGAAACGAGCGGCAACGATCGACCTGAAAGTAGTGGGAAGTTCGAGGGGGAATTTGAATGAAGGAATGAGGAAAATGGAGGAATTGGTGGGGAAGGAGTTGAGAGGGAACTTTGGGGAAAGCATGAAAGGGTTTGTGGGGTATGTGAAGAAGAGGATGGAGGAAGTGAAGAAGGATGAGGAAAGAGTATTGGGGAATGTGAGAGAGATTACAGAGTATTTCCATGGAAATGTGAGCAAAGAAGAGACGAATCCGTTGAGGATTTTTGTGATCGTTAGAGATTTTCTTGGAATGTTAGATAATGTTTGCAAGAGCTTCAAGATTGGTTGTTGA | 2676 | 42.53 | MGCVLKCVFMIVVFISMPFSLEKSHISIANSLLDATESFSVKELERVSGEDENGGNEPFILDRVRALLGLNSLQLGNQSPSDLSPSPSPSPSPSPFTISPSPAPMAAHRVHIHEHSHPHQLRLHKSRPKYKPKRKDPREGRVRKILVAVLVSVGVAILLCSIIAFWVCKKFKSQREESMEKLSVKSEKEDKTARPKSSLDLFDLGRLGMDVEEQTHTSESEKELSVHKEGGRSEEMLDSEFDNVSVSSTKEMMYVHEEDDSKSIQFVSEGTHSSSGDKVTPVQCCSSDDEESFHSCGDSNLSNRRLSNASEISSANVITNSTCSVPTVTLASKLETQCDESNKLLTSDQSHLALFPCNSEPKMQMVPHSVGFQKNANVPSLSPPPPPPPPPPPAVMDRCSFSLSSPFSTGSTSSALLRSSSPALSDSSSVSPIPWNDLPSPQTTTKPSLPSSAIPPPPSPPPILKTSPYSFKTPPPPPSKLPQFMSFGKEANLRPKLKPLHWDKVRAAPDQSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPSKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGNGLRLRQLEALVKMVPTQEEEAKLLSYEGDIGELGCTEKFVIAILRIPFAFQRVEAMLYRETFEDEVNHLRNSFSILEEACKELRSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKINQKNKPRTVEERENDYRRMGLDLVSGLSTELQNVKRAATIDLKVVGSSRGNLNEGMRKMEELVGKELRGNFGESMKGFVGYVKKRMEEVKKDEERVLGNVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDNVCKSFKIGC* | 892 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24487800 | 24492230 | + | CsaV3_1G038870.1 | Csa01g02771 | 517268 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02771 | 891 | MobiDBLite | consensus disorder prediction | 84 | 100 | - | - | |
Csa01g02771 | 891 | SMART | it6_source | 487 | 889 | IPR015425 | - | |
Csa01g02771 | 891 | MobiDBLite | consensus disorder prediction | 401 | 449 | - | - | |
Csa01g02771 | 891 | PANTHER | FORMIN-LIKE PROTEIN | 42 | 313 | - | - | |
Csa01g02771 | 891 | PANTHER | FORMIN-LIKE PROTEIN | 369 | 888 | - | - | |
Csa01g02771 | 891 | MobiDBLite | consensus disorder prediction | 373 | 485 | - | - | |
Csa01g02771 | 891 | MobiDBLite | consensus disorder prediction | 212 | 239 | - | - | |
Csa01g02771 | 891 | Coils | Coil | 648 | 668 | - | - | |
Csa01g02771 | 891 | MobiDBLite | consensus disorder prediction | 379 | 396 | - | - | |
Csa01g02771 | 891 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 500 | 885 | - | - | |
Csa01g02771 | 891 | MobiDBLite | consensus disorder prediction | 450 | 482 | - | - | |
Csa01g02771 | 891 | Gene3D | Formin, FH2 domain | 483 | 888 | IPR042201 | - | |
Csa01g02771 | 891 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 487 | 891 | IPR015425 | - | |
Csa01g02771 | 891 | MobiDBLite | consensus disorder prediction | 78 | 138 | - | - | |
Csa01g02771 | 891 | MobiDBLite | consensus disorder prediction | 112 | 132 | - | - | |
Csa01g02771 | 891 | Pfam | Formin Homology 2 Domain | 489 | 880 | IPR015425 | - | |
Csa01g02771 | 891 | PANTHER | FORMIN-RELATED | 369 | 888 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
Csa01g02771 | 891 | PANTHER | FORMIN-RELATED | 42 | 313 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02771 | Csa-Chr1:24487800 | Csa05g00980 | Csa-Chr5:8967816 | 2.60E-124 | dispersed | |
Csa01g02771 | Csa-Chr1:24487800 | Csa02g01413 | Csa-Chr2:13503958 | 3.84E-130 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02771 | - | - | csv:101208374 | 1573.91 |