Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02773 ATGTCCAAAATCTCAGGGTGTTCTGATGATGGTGGGAGCTTTGTGTCTGATGCTGAGAAATTAGAGAATCAGTTCTTTAATGGAACCTTTGAATCTCATCATCAACAACCTCAACCTCAGCTTGTAGTTCCCAAGAAGAAGAGGAACTTGCCAGGAACACCAGTTCCGGATGCGGAGGTGGTGGCATTATCTCCCGAAACCCTAATGGCGACGAATCGATTCTTGTGTGAGATATGTAACAAAGGGTTTCAAAGAGATCAGAACTTGCAACTACACAGACGAGGGCATAACCTACCGTGGAAGTTGAAGCAAAGGACGAGTGGGAGCGAGACGAAGAGGAAGGTGTATGTGTGCCCGGAACCGTCATGCGTCCACCACGACCCAGGGAGGGCACTGGGAGACCTCACGGGAATCAAGAAACATTTCAGCAGAAAGCATGGGGAGAAGAAGTGGAAATGTGAGAAATGCTCGAAGAAATATGCTGTTCAATCTGACTTGAAGGCTCATACCAAAGCATGTGGATCCAAGGAATACAAATGTGACTGTGGCACTATCTTTTCCAGAAGAGATAGCTTTATCACCCATAGAGCATTTTGTGATGCCTTAGCAGAAGAACACAACAAATTAGTCAATGCTCATCAAGGAGCAACAACAATGGCTTCTTCCACAGCCATTAATGGACCTAATTCCTTTCAACCTCAACCACTTCCTCATCTTCTCTCTCGACCCGGCATCCTTTCGCTGCCGTTAACAACGCTGCCCCACGACCTTATGCCTATTCCTCCAAAGCCCTTAAACCTATCTGCTGGATCCATGTTTTCATCTTCCATTTCCAACAACTCCGCCACCCCCACCACCTTTCAAAACGACAACCATCTCTTTTCCTCCTCCTCCGCTCTCATGTCCGCTACCGCTCTGTTGCAGAAGGCAGCACAGATGGGAGCTGCTGTTAGCAGCGGTGGAAACTCCGGTACTCCTTGTTTCAACTCACCCATGATCCATGAGAAGAAGGGTTTTGTTACAACCATGGCTCCTTCTTCCTTCTGTGGGCTATTGGCCACCAACTGTTTACAAAGATGTCCACAAGATCAAAATATGTTATCCCAACTACCTTCAAAGGGCAAAGCAATGGACATGGAGATGATGATCGATGACGACAACAACAACAACAACATTACGATGATGAACGGAGTGTTCGATCAGCGGTCGTTGCTCGTGGAAGCAGCTAGGAAGACGACGACGCTAGATTTGTTGGGGGATGAGGGAGGGAATAATAAAGGGATGAAATTTCAAGCACAAGATCATCAAAGTAGTGTGGGGTTATTGGAGGGCTTGTGGAGAATATGA 1347 46.92 MSKISGCSDDGGSFVSDAEKLENQFFNGTFESHHQQPQPQLVVPKKKRNLPGTPVPDAEVVALSPETLMATNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSGSETKRKVYVCPEPSCVHHDPGRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDLKAHTKACGSKEYKCDCGTIFSRRDSFITHRAFCDALAEEHNKLVNAHQGATTMASSTAINGPNSFQPQPLPHLLSRPGILSLPLTTLPHDLMPIPPKPLNLSAGSMFSSSISNNSATPTTFQNDNHLFSSSSALMSATALLQKAAQMGAAVSSGGNSGTPCFNSPMIHEKKGFVTTMAPSSFCGLLATNCLQRCPQDQNMLSQLPSKGKAMDMEMMIDDDNNNNNITMMNGVFDQRSLLVEAARKTTTLDLLGDEGGNNKGMKFQAQDHQSSVGLLEGLWRI* 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24495683 24500943 - CsaV3_1G038890.1 Csa01g02773 517270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02773 448 SUPERFAMILY beta-beta-alpha zinc fingers 73 171 IPR036236 -
Csa01g02773 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 74 96 IPR013087 -
Csa01g02773 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 151 179 IPR013087 -
Csa01g02773 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 400 - -
Csa01g02773 448 Gene3D Classic Zinc Finger 127 209 - -
Csa01g02773 448 ProSitePatterns Zinc finger C2H2 type domain signature. 76 96 IPR013087 -
Csa01g02773 448 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 11 400 - -
Csa01g02773 448 Gene3D Classic Zinc Finger 57 121 - -
Csa01g02773 448 SMART c2h2final6 151 171 IPR013087 -
Csa01g02773 448 SMART c2h2final6 74 96 IPR013087 -
Csa01g02773 448 SMART c2h2final6 116 146 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02773 Csa-Chr1:24495683 Csa02g02630 Csa-Chr2:22847054 1.78E-105 dispersed
Csa01g02773 Csa-Chr1:24495683 Csa07g00313 Csa-Chr7:2338789 7.15E-106 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30800 None None None None Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02773 - - csv:101206977 858.211