Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02776 | ATGGAAAACCATCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCAAAGAAGAAAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGACATTTATTGGGCATTTGGTTCTCTTGGCTTAGATAATTATGCTGAAGCTTCTTCCAAGTTCTTGCTTAACTTTAGAGAAGTTGAAAGAATCAAGGTTGATGAAAAACACAAAAGTAAAGATAACCATGGAGAGATCGGGCTTATGTTTGAGAACTCATGTGACATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACCTTTGAAACTGAAATACGTGGTGTCATTCCGGTTGTTAAAGCATCTATTGGTGGGACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACGGATCAAGAACTTCAGCACTTGAGGAACAGTTTGCCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTTTGGGAAACACGATTGCTTGTAATGATCACGTTGCTCTCGCACATTCTGATCTTGATCGGGAAACTGAAGAGCTCATCGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTTCTCGTGGGAAGCTACTCTAGTTTTACGAATAGGGGAGGCTTGGTTCATCCACATACATCCGTTGAAGATTTGGACGAGCTATCAACCCTTCTTCAGGTCCCGTTAGTCGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCGGCTGGATTAACAGCAAATGACTGGACTGCATTTTGTGGTTCGGACACCACTGCCACCGAGTTATCGGTCATCGAGAATGTTTTCAAATTGAGGGAGGCTCAACCAAGCTCCATTGTCGAAGAAATGAGGAAGTCGTTGATTGACAGTCATGTGAATACTATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATAGCCAATGTTGAGAGAATAATGAAGAAGATAGTTCCAGAAAAGGGAAAGATTTCAAAAGAAGCCAAGAAGAGAATGCAAGAATGTGCGAATGAGTTCATTAACTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGATATCTATTGGGCATTTGATTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCAAGTACCTGCTTAAGTTCAGAGAAGCTGAGAGAATCAAAGCTTCTGATAAAGCTATTATTACTTTCCAAGATCAACATGCAGGAGAAGAGGATCAATGA | 1437 | 41.27 | MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKHKSKDNHGEIGLMFENSCDIGVFSKLTNAYCLVAIGGSENFYSTFETEIRGVIPVVKASIGGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHSDLDRETEELIADVLGVEVFRQTVAGNVLVGSYSSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIENVFKLREAQPSSIVEEMRKSLIDSHVNTMGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDIYWAFDSLGLDNYAEASSKYLLKFREAERIKASDKAIITFQDQHAGEEDQ* | 479 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24509832 | 24515237 | + | CsaV3_1G038920.1 | Csa01g02776 | 517273 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02776 | 478 | Gene3D | Histone, subunit A | 359 | 478 | IPR009072 | GO:0046982 | |
Csa01g02776 | 478 | Gene3D | Histone, subunit A | 2 | 117 | IPR009072 | GO:0046982 | |
Csa01g02776 | 478 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 118 | 366 | - | - | |
Csa01g02776 | 478 | Hamap | Translation initiation factor 6 [eif6]. | 103 | 358 | IPR002769 | GO:0042256|GO:0043022 | |
Csa01g02776 | 478 | PRINTS | CCAAT-binding transcription factor subunit A signature | 435 | 453 | - | - | |
Csa01g02776 | 478 | PRINTS | CCAAT-binding transcription factor subunit A signature | 40 | 58 | - | - | |
Csa01g02776 | 478 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
Csa01g02776 | 478 | SMART | eIF6neu2 | 116 | 317 | IPR002769 | GO:0042256|GO:0043022 | |
Csa01g02776 | 478 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 12 | 75 | IPR003958 | - | |
Csa01g02776 | 478 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 369 | 432 | IPR003958 | - | |
Csa01g02776 | 478 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 6 | 118 | 366 | IPR002769 | GO:0042256|GO:0043022 | |
Csa01g02776 | 478 | SUPERFAMILY | Histone-fold | 367 | 472 | IPR009072 | GO:0046982 | |
Csa01g02776 | 478 | Gene3D | - | 118 | 338 | - | - | |
Csa01g02776 | 478 | Pfam | eIF-6 family | 119 | 316 | IPR002769 | GO:0042256|GO:0043022 | |
Csa01g02776 | 478 | SUPERFAMILY | Pentein | 119 | 337 | - | - | |
Csa01g02776 | 478 | TIGRFAM | eIF-6: putative translation initiation factor eIF-6 | 119 | 337 | IPR002769 | GO:0042256|GO:0043022 | |
Csa01g02776 | 478 | SUPERFAMILY | Histone-fold | 12 | 111 | IPR009072 | GO:0046982 | |
Csa01g02776 | 478 | CDD | IF6 | 120 | 336 | IPR002769 | GO:0042256|GO:0043022 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02776 | Csa-Chr1:24509832 | Csa02g01643 | Csa-Chr2:15547688 | 4.19E-163 | dispersed | |
Csa01g02776 | Csa-Chr1:24509832 | Csa03g03243 | Csa-Chr3:29752680 | 3.09E-30 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
30801 | PF01912 | eIF-6 | 1.10E-76 | CL0197 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02776 | K03264 | - | csv:101207707 | 474.937 |