Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02776 ATGGAAAACCATCATAATGGGGATGAGTTTCTTGAGCTACCAATTGCCAATGTTGAGAGAATAATGAAGAAGATAATTCCACAAAAGGGGAAGATTTCAAAAGAAGCAAAGAAGAAAATGCAAGAATGTGCAAATGAGTTCATTAGCTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGACATTTATTGGGCATTTGGTTCTCTTGGCTTAGATAATTATGCTGAAGCTTCTTCCAAGTTCTTGCTTAACTTTAGAGAAGTTGAAAGAATCAAGGTTGATGAAAAACACAAAAGTAAAGATAACCATGGAGAGATCGGGCTTATGTTTGAGAACTCATGTGACATTGGGGTTTTCTCCAAGCTCACTAATGCTTACTGCTTGGTTGCAATTGGTGGCTCTGAGAATTTCTACAGTACCTTTGAAACTGAAATACGTGGTGTCATTCCGGTTGTTAAAGCATCTATTGGTGGGACTCGCATTATTGGCCGTCTATGTGCTGGAAACAAAAATGGGCTTCTTGTACCACACACCACTACGGATCAAGAACTTCAGCACTTGAGGAACAGTTTGCCTGACCAAGTTGTTGTTCAACGTATACAAGAGAGACTGTCTGCTTTGGGAAACACGATTGCTTGTAATGATCACGTTGCTCTCGCACATTCTGATCTTGATCGGGAAACTGAAGAGCTCATCGCTGATGTTCTTGGAGTAGAGGTCTTTAGGCAGACAGTAGCAGGCAACGTTCTCGTGGGAAGCTACTCTAGTTTTACGAATAGGGGAGGCTTGGTTCATCCACATACATCCGTTGAAGATTTGGACGAGCTATCAACCCTTCTTCAGGTCCCGTTAGTCGCTGGAACCGTGAATCGTGGAAGTGAAGTGATTGCGGCTGGATTAACAGCAAATGACTGGACTGCATTTTGTGGTTCGGACACCACTGCCACCGAGTTATCGGTCATCGAGAATGTTTTCAAATTGAGGGAGGCTCAACCAAGCTCCATTGTCGAAGAAATGAGGAAGTCGTTGATTGACAGTCATGTGAATACTATGGGAGAGAATTGGGAAAGTCTTCAACTACCAATAGCCAATGTTGAGAGAATAATGAAGAAGATAGTTCCAGAAAAGGGAAAGATTTCAAAAGAAGCCAAGAAGAGAATGCAAGAATGTGCGAATGAGTTCATTAACTTTGTCACAAGTGAAGCAGCACAAAGATGTCAGAATGAGAATAGAAGAACTCTCAATGGTGATGATATCTATTGGGCATTTGATTCTCTTGGCTTAGATAATTATGCTGAGGCTTCTTCCAAGTACCTGCTTAAGTTCAGAGAAGCTGAGAGAATCAAAGCTTCTGATAAAGCTATTATTACTTTCCAAGATCAACATGCAGGAGAAGAGGATCAATGA 1437 41.27 MENHHNGDEFLELPIANVERIMKKIIPQKGKISKEAKKKMQECANEFISFVTSEAAQRCQNENRRTLNGDDIYWAFGSLGLDNYAEASSKFLLNFREVERIKVDEKHKSKDNHGEIGLMFENSCDIGVFSKLTNAYCLVAIGGSENFYSTFETEIRGVIPVVKASIGGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDQVVVQRIQERLSALGNTIACNDHVALAHSDLDRETEELIADVLGVEVFRQTVAGNVLVGSYSSFTNRGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTANDWTAFCGSDTTATELSVIENVFKLREAQPSSIVEEMRKSLIDSHVNTMGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNENRRTLNGDDIYWAFDSLGLDNYAEASSKYLLKFREAERIKASDKAIITFQDQHAGEEDQ* 479
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24509832 24515237 + CsaV3_1G038920.1 Csa01g02776 517273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02776 478 Gene3D Histone, subunit A 359 478 IPR009072 GO:0046982
Csa01g02776 478 Gene3D Histone, subunit A 2 117 IPR009072 GO:0046982
Csa01g02776 478 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 118 366 - -
Csa01g02776 478 Hamap Translation initiation factor 6 [eif6]. 103 358 IPR002769 GO:0042256|GO:0043022
Csa01g02776 478 PRINTS CCAAT-binding transcription factor subunit A signature 435 453 - -
Csa01g02776 478 PRINTS CCAAT-binding transcription factor subunit A signature 40 58 - -
Csa01g02776 478 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Csa01g02776 478 SMART eIF6neu2 116 317 IPR002769 GO:0042256|GO:0043022
Csa01g02776 478 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 12 75 IPR003958 -
Csa01g02776 478 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 369 432 IPR003958 -
Csa01g02776 478 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 118 366 IPR002769 GO:0042256|GO:0043022
Csa01g02776 478 SUPERFAMILY Histone-fold 367 472 IPR009072 GO:0046982
Csa01g02776 478 Gene3D - 118 338 - -
Csa01g02776 478 Pfam eIF-6 family 119 316 IPR002769 GO:0042256|GO:0043022
Csa01g02776 478 SUPERFAMILY Pentein 119 337 - -
Csa01g02776 478 TIGRFAM eIF-6: putative translation initiation factor eIF-6 119 337 IPR002769 GO:0042256|GO:0043022
Csa01g02776 478 SUPERFAMILY Histone-fold 12 111 IPR009072 GO:0046982
Csa01g02776 478 CDD IF6 120 336 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02776 Csa-Chr1:24509832 Csa02g01643 Csa-Chr2:15547688 4.19E-163 dispersed
Csa01g02776 Csa-Chr1:24509832 Csa03g03243 Csa-Chr3:29752680 3.09E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30801 PF01912 eIF-6 1.10E-76 CL0197 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02776 K03264 - csv:101207707 474.937