Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02790 ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCGGTTGGCAGCGGAGGTCAGATAGCATATGGTAGCAATCTGTACCATCCCAACCAAATGTCTGTAGGTCCAACTTCGGGATCTGTTGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCACAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCACACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATTTGAAAGATGAAGTACTCACGTCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTACATGCCATCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCTCCACAAATGTGGCAGCATGCACAAGATCAAGCCCCTCCTGATCAATAA 780 46.54 MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHAQDQAPPDQ* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24577509 24580877 - CsaV3_1G039060.1 Csa01g02790 517287

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02790 259 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Csa01g02790 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 258 - -
Csa01g02790 259 SUPERFAMILY Histone-fold 69 175 IPR009072 GO:0046982
Csa01g02790 259 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Csa01g02790 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 258 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02790 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - csv:101209664 445.277
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00052 Csa-Chr1:296768 Csa01g02790 Csa-Chr1:24577509 6.97E-70 dispersed
Csa01g02790 Csa-Chr1:24577509 Csa07g00504 Csa-Chr7:3626972 6.56E-77 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g00052 . 35 219 CCAAT-HAP5 Transcription Factor Family AT3G48590 89.0 4.2e-88 321.2
Csa01g02790 . 82 249 CCAAT-HAP5 Transcription Factor Family AT3G48590 64.9 2.6e-53 205.7
Csa07g00504 . 82 225 CCAAT-HAP5 Transcription Factor Family AT3G48590 68.8 7.4e-53 204.1
Csa01g02790 . 1 259 CCAAT-HAP5 Transcription Factor Family AT1G08970 55.8 6.4e-57 217.6
Csa07g00504 . 22 180 CCAAT-HAP5 Transcription Factor Family AT1G08970 68.8 6.4e-49 191.0
Csa01g00052 . 34 133 CCAAT-HAP5 Transcription Factor Family AT1G08970 83.0 6.9e-43 171.0
Csa01g02790 . 23 249 CCAAT-HAP5 Transcription Factor Family AT1G54830 60.5 3.1e-61 231.9
Csa07g00504 . 28 224 CCAAT-HAP5 Transcription Factor Family AT1G54830 59.1 2.0e-52 202.6
Csa01g00052 . 34 193 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.3 1.7e-51 199.5
Csa01g00052 . 34 192 CCAAT-HAP5 Transcription Factor Family AT5G50480 54.7 3.4e-38 155.2
Csa01g00052 . 35 219 CCAAT-HAP5 Transcription Factor Family AT5G63470 80.9 3.4e-80 295.0
Csa01g02790 . 82 250 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.8 6.3e-50 194.5
Csa07g00504 . 82 233 CCAAT-HAP5 Transcription Factor Family AT5G63470 63.9 1.8e-49 193.0
Csa07g00504 . 46 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 81.1 2.1e-64 242.3
Csa01g00052 . 35 158 CCAAT-HAP5 Transcription Factor Family AT1G56170 74.8 3.8e-50 194.9
Csa01g02790 . 54 213 CCAAT-HAP5 Transcription Factor Family AT1G56170 69.1 6.6e-50 194.1
Csa06g02035 . 1 135 CCAAT-HAP5 Transcription Factor Family AT5G43250 63.3 2.4e-37 151.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30802 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Csa TF