Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02790 ATGGATCAGCAAGGGCATGGCCAGCCTCCATCCATGGGAGCGGTTGGCAGCGGAGGTCAGATAGCATATGGTAGCAATCTGTACCATCCCAACCAAATGTCTGTAGGTCCAACTTCGGGATCTGTTGTTACATCAGTCGGAGGCATTCAGTCTACGAGTCAACCTGGTGGAGCACAGCTTGCTCAACATCAACTTGCTTATCAACATATCCACCAGCAGCAGCAACAACAGCTTCAACAACAGCTCCAGACTTTTTGGGTAAATCAATACCAAGAGATTGAGAAGGTAACAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGATGAGGATGTACGAATGATATCAGCTGAGGCACCTGTTTTATTTGCTAGGGCATGTGAAATGTTCATCCTGGAATTGACTTTACGGTCTTGGAATCACACCGAAGAGAACAAGCGCAGGACACTTCAAAAGAATGATATTGCTGCAGCTATCACAAGAACTGACATTTTCGACTTTCTGGTTGATATAGTGCCGAGGGAGGATTTGAAAGATGAAGTACTCACGTCGATTCCAAGAGGATCAATGACAGTTGGGGGACCTGGAGATACACTTCCTTACTACATGCCATCTCAGCATGCACCTCAGGTTGGGGCACCTGGAATGATCATGGGTAAGCCAGTTATGGACCCAGCTATGTATGCTCCACAATCACACCCTTATATGGCTCCACAAATGTGGCAGCATGCACAAGATCAAGCCCCTCCTGATCAATAA 780 46.54 MDQQGHGQPPSMGAVGSGGQIAYGSNLYHPNQMSVGPTSGSVVTSVGGIQSTSQPGGAQLAQHQLAYQHIHQQQQQQLQQQLQTFWVNQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEVLTSIPRGSMTVGGPGDTLPYYMPSQHAPQVGAPGMIMGKPVMDPAMYAPQSHPYMAPQMWQHAQDQAPPDQ* 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24577509 24580877 - CsaV3_1G039060.1 Csa01g02790 517287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02790 259 Gene3D Histone, subunit A 65 181 IPR009072 GO:0046982
Csa01g02790 259 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 258 - -
Csa01g02790 259 SUPERFAMILY Histone-fold 69 175 IPR009072 GO:0046982
Csa01g02790 259 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 103 166 IPR003958 -
Csa01g02790 259 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 1 258 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g00052 Csa-Chr1:296768 Csa01g02790 Csa-Chr1:24577509 6.97E-70 dispersed
Csa01g02790 Csa-Chr1:24577509 Csa07g00504 Csa-Chr7:3626972 6.56E-77 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30802 PF00808 CBFD_NFYB_HMF 2.80E-18 CL0012 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02790 K08066 - csv:101209664 445.277