Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02799 ATGGAAGTTAACAACAATTCAAGAACACTACCACCACCACCACCACCAAGAACCCACTTCCATAACCACAACAATTCCAAACCCCATCAACATTTCCACACTCACAATGCCATTCTCAGCTCAAATTCCATCCTCATTATCATTGCTTCAATCATTTCCATCACCATTCTCCTTGCCATTTTCCTCCTTATCTTCATGCTCCTTCGCCTCAAATCTGCTCGAAACACTGCCACTGCTACCTCCGCCTCCTCCGCCACCACACAATCCACCACATTCATCATCCCTCACACAACCATCAATTTTGATTCAAGCCCAGAAGTTAAAGGGGGTGGATGCTTATATGGAGGAAACTCTGGGAGAATTCCTCAGTATAGAATCAGGGGAGTTCAAGTTTTCACTTATAAGGAGCTGGAATTGGCTACTGATAATTTTAGTGAAGCAAATGTTATTGGAAATGGAAGATTAGGGTTTGTGTATAGAGGAGTTCTTGCAGATGGAGCTGTTGTTGCCATTAAAATGCTTCATAGAGATGGCAAACAGAGGGAACGTTCTTTCAGAATGGAGGTGGATCTCCTAAGCCGCTTGCACTCTCCTTGTTTGGTGGAGTTGCTTGGCTACTGTGCGGACCAACACCATAGGCTTCTGATATTTGAATTTATGCACAATGGCACTCTTCATCATCATCTACATAATCCCAACAGCGAATCTCAGCCATTGGATTGGAATACTAGATTGAGGATAGCCCTTGATTGTGCCAAGGCACTTGAGTTCCTCCATGAGCATGCTGTTCCATCTGTTATTCATAGAAACTTCAAGTGTACCAATGTTCTACTGGATCAGGATTTGCGAGCTAAGGTGTCAGATTTCGGTTCGGCCAAGATGGGCTCTGACAAGATCAATGGTCAGATATCCACACAAGTCCTGGGAACCACAGGATATCTAGCACCAGAGTATGCTTCAACCGGAAAACTCACAACAAAGTCAGATGTGTACAGCTTTGGTGTTGTGCTGCTAGAGCTATTGACTGGTCGAGTGCCGGTTGATATCAAGAGACCGCAGGGCGAGCATGTTCTTGTCTCATGGGCTCTCCCAAGGCTGACTAATAGAGAAAAAGTAGAGAAAATGATTGACCCAGCTATTCAAGGGAAGTACTCAAAAAAGGATCTAATTCAGGTAGCAGCCATTGCAGCCATGTGTGTGCAGCCTGAAGCTGACTACCGGCCTTTGATGACCGATGTCGTTCAGTCACTGGTTCCTCTAGTTAAGAACCCATCGTCGTCGTATCGGTTCTTCAATTGA 1299 44.96 MEVNNNSRTLPPPPPPRTHFHNHNNSKPHQHFHTHNAILSSNSILIIIASIISITILLAIFLLIFMLLRLKSARNTATATSASSATTQSTTFIIPHTTINFDSSPEVKGGGCLYGGNSGRIPQYRIRGVQVFTYKELELATDNFSEANVIGNGRLGFVYRGVLADGAVVAIKMLHRDGKQRERSFRMEVDLLSRLHSPCLVELLGYCADQHHRLLIFEFMHNGTLHHHLHNPNSESQPLDWNTRLRIALDCAKALEFLHEHAVPSVIHRNFKCTNVLLDQDLRAKVSDFGSAKMGSDKINGQISTQVLGTTGYLAPEYASTGKLTTKSDVYSFGVVLLELLTGRVPVDIKRPQGEHVLVSWALPRLTNREKVEKMIDPAIQGKYSKKDLIQVAAIAAMCVQPEADYRPLMTDVVQSLVPLVKNPSSSYRFFN* 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24642337 24645926 + CsaV3_1G039150.1 Csa01g02799 517296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02799 432 SUPERFAMILY Protein kinase-like (PK-like) 122 417 IPR011009 -
Csa01g02799 432 MobiDBLite consensus disorder prediction 1 31 - -
Csa01g02799 432 PANTHER SERINE/THREONINE-PROTEIN KINASE CDL1-LIKE 17 427 - -
Csa01g02799 432 Gene3D Transferase(Phosphotransferase) domain 1 220 428 - -
Csa01g02799 432 Gene3D Phosphorylase Kinase; domain 1 117 219 - -
Csa01g02799 432 ProSiteProfiles Protein kinase domain profile. 144 421 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02799 432 CDD STKc_IRAK 150 420 - -
Csa01g02799 432 Pfam Protein tyrosine and serine/threonine kinase 148 417 IPR001245 GO:0004672|GO:0006468
Csa01g02799 432 PANTHER OS01G0750732 PROTEIN 17 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g01328 Csa-Chr1:8562065 Csa01g02799 Csa-Chr1:24642337 5.75E-126 dispersed
Csa01g02799 Csa-Chr1:24642337 Csa03g02648 Csa-Chr3:24972443 1.79E-101 dispersed
Csa02g02414 Csa-Chr2:21306138 Csa01g02799 Csa-Chr1:24642337 7.30E-93 dispersed
Csa04g02655 Csa-Chr4:25873961 Csa01g02799 Csa-Chr1:24642337 6.09E-89 dispersed
Csa07g02110 Csa-Chr7:20302074 Csa01g02799 Csa-Chr1:24642337 1.28E-92 dispersed
Csa01g02799 Csa-Chr1:24642337 Csa07g02390 Csa-Chr7:21999971 9.92E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77838 PF07714 PK_Tyr_Ser-Thr 2.50E-44 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02799 - - csv:101210578 788.875