Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02836 | ATGACTCCCATTTTGAGTTATGTTGTGTCTAAATGGCAAGCGTTGTCCACTTCTGACCACGCCTCTGTTGTTTCCATTAACTTGTTTGTGGCACTTCTCTGTGCTTGTATTGTCATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAATGAGTCCATCACCGCACTCTTTATTGGTTTGTTTACTGGAATCATCATTTTACTAGTTAGTGGTGGGAAAAGTTCGCATCTATTGCTCTTTAGCGAAGACACGTTCTTCATTTATCTTCTGCCTCCGATTATATTCAACGCCGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGATGTTTGGCGCAATTGGTACATTAGTCTCTTGTTCAGTCATCTCATTAGGAGCTTTTCAGTTATTTAAGAAAATGGATGTTGGATCTCTCGAAATTGCTGATATTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACGTTGCAGATATTAAACCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTGAATGACGCCACATCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAAAGTTGATGCAACAGTTGGTTTGCATTTTATTGGGAGCTTCTTTTATTTATTTTCAACCAGCACTTTACTCGGAGTATTTGTTGGCTTGCTGAGTGCTTATGTCATCAAAAAGTTATATTTTGGCAGGCACTCAACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATATCTTTCTTATATGCTGGCTGAATTACTAGATTTGAGTGGCATTCTCACGGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAATGTGACTGAGAGCTCAAGAGTTACCACCAAGCATGCTTTTGCCACCTTATCCTTCATTTCTGAGACGTTTATCTTCGTCTATGTCGGCATGGATGCATTGGACATTGAGAAGTGGAGCTTTGTTAGTGATAGTCCGGGGACATCAGTTGCTGTGAGCGCAATATTACTAGGCCTTGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCGTTGTCATTTATATCAAACTTGGCTAAAAAATCTGCTAGCGAGAAAATTACCTTCCGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTTTAGCTTATCATCAGTTCACTAGAGCTGGGCACACTCAACTTCGAGGGAATGCAATGATGATCACCAGTACCATCACTGTTGTCCTCTTCAGCACGATGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGATACCTCAACCAAAACACACCACCAGCATGCTATCGGACCCTGGGACTCCAAAGTCATTCTCGGTTCCACTACTTGGAAGTGCACAGGAGTCAGAGCTGGATCTTCCTCGTCCAAGCAGTATACGTGCACTCCTTGCGACTCCTACACACACTGTTCATCGCTACTGGCGAAAGTTCGACGATGCCTTCATGCGTCCAATGTTTGGGGGTCGGGGTTTTGTTCCTTTTGTTCCAGGATCGCCAACCGAAAGGGGTCGACACTGA | 1599 | 42.84 | MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALFIGLFTGIIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMMFGAIGTLVSCSVISLGAFQLFKKMDVGSLEIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSKVDATVGLHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSASEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLINCLIPQPKHTTSMLSDPGTPKSFSVPLLGSAQESELDLPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGRH* | 533 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24892478 | 24899705 | - | CsaV3_1G039520.1 | Csa01g02836 | 517333 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02836 | 532 | PANTHER | SODIUM/HYDROGEN EXCHANGER 2 | 7 | 532 | - | - | |
Csa01g02836 | 532 | TIGRFAM | b_cpa1: sodium/hydrogen exchanger 3 | 24 | 446 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa01g02836 | 532 | Gene3D | - | 145 | 197 | - | - | |
Csa01g02836 | 532 | Pfam | Sodium/hydrogen exchanger family | 29 | 443 | IPR006153 | GO:0006812|GO:0015299|GO:0016021|GO:0055085 | |
Csa01g02836 | 532 | PRINTS | Na+/H+ exchanger signature | 84 | 95 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa01g02836 | 532 | PRINTS | Na+/H+ exchanger signature | 98 | 112 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa01g02836 | 532 | PRINTS | Na+/H+ exchanger signature | 113 | 121 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa01g02836 | 532 | PRINTS | Na+/H+ exchanger signature | 153 | 163 | IPR004709 | GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085 | |
Csa01g02836 | 532 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 7 | 532 | IPR018422 | GO:0006812|GO:0015299|GO:0016021 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02836 | Csa-Chr1:24892478 | Csa06g00570 | Csa-Chr6:4886077 | 0 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02836 | - | - | csv:101214934 | 1019.99 |