Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02836 ATGACTCCCATTTTGAGTTATGTTGTGTCTAAATGGCAAGCGTTGTCCACTTCTGACCACGCCTCTGTTGTTTCCATTAACTTGTTTGTGGCACTTCTCTGTGCTTGTATTGTCATTGGTCATCTTCTTGAGGAGACCCGGTGGATGAATGAGTCCATCACCGCACTCTTTATTGGTTTGTTTACTGGAATCATCATTTTACTAGTTAGTGGTGGGAAAAGTTCGCATCTATTGCTCTTTAGCGAAGACACGTTCTTCATTTATCTTCTGCCTCCGATTATATTCAACGCCGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTTAACTTTATGACCATTATGATGTTTGGCGCAATTGGTACATTAGTCTCTTGTTCAGTCATCTCATTAGGAGCTTTTCAGTTATTTAAGAAAATGGATGTTGGATCTCTCGAAATTGCTGATATTTTAGCAATTGGAGCTATATTTGCCGCAACAGATTCTGTATGCACGTTGCAGATATTAAACCAGGATGAAACCCCTCTACTTTACAGTCTAGTATTTGGGGAGGGTGTAGTGAATGACGCCACATCTGTGGTGCTTTTCAATGCAATTCAGAGCTTAGATCTCAGTAAAGTTGATGCAACAGTTGGTTTGCATTTTATTGGGAGCTTCTTTTATTTATTTTCAACCAGCACTTTACTCGGAGTATTTGTTGGCTTGCTGAGTGCTTATGTCATCAAAAAGTTATATTTTGGCAGGCACTCAACAGATCGTGAGGTTGCTCTTATGATACTCATGGCATATCTTTCTTATATGCTGGCTGAATTACTAGATTTGAGTGGCATTCTCACGGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAATGTGACTGAGAGCTCAAGAGTTACCACCAAGCATGCTTTTGCCACCTTATCCTTCATTTCTGAGACGTTTATCTTCGTCTATGTCGGCATGGATGCATTGGACATTGAGAAGTGGAGCTTTGTTAGTGATAGTCCGGGGACATCAGTTGCTGTGAGCGCAATATTACTAGGCCTTGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCGTTGTCATTTATATCAAACTTGGCTAAAAAATCTGCTAGCGAGAAAATTACCTTCCGGGAACAAGTTATCATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCTATTGCTTTAGCTTATCATCAGTTCACTAGAGCTGGGCACACTCAACTTCGAGGGAATGCAATGATGATCACCAGTACCATCACTGTTGTCCTCTTCAGCACGATGGTGTTTGGATTATTGACCAAGCCTCTTATTAACTGTTTGATACCTCAACCAAAACACACCACCAGCATGCTATCGGACCCTGGGACTCCAAAGTCATTCTCGGTTCCACTACTTGGAAGTGCACAGGAGTCAGAGCTGGATCTTCCTCGTCCAAGCAGTATACGTGCACTCCTTGCGACTCCTACACACACTGTTCATCGCTACTGGCGAAAGTTCGACGATGCCTTCATGCGTCCAATGTTTGGGGGTCGGGGTTTTGTTCCTTTTGTTCCAGGATCGCCAACCGAAAGGGGTCGACACTGA 1599 42.84 MTPILSYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALFIGLFTGIIILLVSGGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMMFGAIGTLVSCSVISLGAFQLFKKMDVGSLEIADILAIGAIFAATDSVCTLQILNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSLDLSKVDATVGLHFIGSFFYLFSTSTLLGVFVGLLSAYVIKKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISETFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAILLGLVMVGRAAFVFPLSFISNLAKKSASEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTITVVLFSTMVFGLLTKPLINCLIPQPKHTTSMLSDPGTPKSFSVPLLGSAQESELDLPRPSSIRALLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGRH* 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24892478 24899705 - CsaV3_1G039520.1 Csa01g02836 517333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02836 532 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 532 - -
Csa01g02836 532 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 24 446 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa01g02836 532 Gene3D - 145 197 - -
Csa01g02836 532 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Csa01g02836 532 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa01g02836 532 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa01g02836 532 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa01g02836 532 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Csa01g02836 532 PANTHER SODIUM/HYDROGEN EXCHANGER 7 532 IPR018422 GO:0006812|GO:0015299|GO:0016021
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02836 Csa-Chr1:24892478 Csa06g00570 Csa-Chr6:4886077 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02836 - - csv:101214934 1019.99