Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02837 ATGGGGTGTTTGGTTAGCCGAGAGGCGTCTTCTAGAAGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAAGGCGAGATTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGTTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAACAGAAGGCTGATGTGGTTCAGGATCGCCCACGAGCTGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACAGCTGTTTGCGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATCTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTCATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTAGAAGGGTTGGTTACATCACGGATGTCATGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCGAATCCATCAATCAAATTTACTGAATCTCAGGTTAAATGTTTTATGCAACAACTGTTATCTGGATTGGAACACTGTCATAATCGCCGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGAGGAGTGCTTAAGATTGCTGACTTTGGATTGGCTTCTTTCTTTGATCCAAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCAGAGTTATTAGCTGGGAGGCCTATTATGCCAGGTCGTACAGAGGTAGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTTCCAAATGCAACCTTATTTAAGCCCAGAGACCCTTATAAGAGATGTATAAAAGAGACATTTAAAGATTTTCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCCTGCAAACCCTCCAACCTTCCAAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGACGAAGCTCGAAGATTAAGAGCAGCTAGTAAAGCTCAAGGAGATGGAGCAAAGAAAACACGCACACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCCGAAATACAAACAAATATTGACAGAAGGCGCTTAATTACACATGCTAATGCAAAGAGCAAAAGTGAAAAGTTCCCCCCACCACACCAAGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATCGACCCAGCTGGTGTTCCTCCCGACATACCGTTCAGCTCGACGTTATTCACTTATTCTAAGGAACCAATCCAAGCTTGGTCTGGTCCACTAGTCCCGGGTGCTGGCACTGATGCTCCTCATAGACAGAAGAAGCATGTAGGAGGTAAAGGCAAGAAAATCATGGTCTAA 1695 44.01 MGCLVSREASSRSVEAPVDKGKRNQITESRVQGEIVQEKEVERVSVNVEEHVNVNKEEEQKADVVQDRPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPRDPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAASKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAGVPPDIPFSSTLFTYSKEPIQAWSGPLVPGAGTDAPHRQKKHVGGKGKKIMV* 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24909570 24919473 - CsaV3_1G039530.1 Csa01g02837 517334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02837 564 PANTHER OS01G0367700 PROTEIN 49 550 - -
Csa01g02837 564 MobiDBLite consensus disorder prediction 50 93 - -
Csa01g02837 564 MobiDBLite consensus disorder prediction 423 454 - -
Csa01g02837 564 Gene3D Phosphorylase Kinase; domain 1 108 203 - -
Csa01g02837 564 MobiDBLite consensus disorder prediction 50 73 - -
Csa01g02837 564 PANTHER CELL DIVISION PROTEIN KINASE 49 550 - -
Csa01g02837 564 MobiDBLite consensus disorder prediction 545 564 - -
Csa01g02837 564 Gene3D Transferase(Phosphotransferase) domain 1 204 444 - -
Csa01g02837 564 CDD STKc_CDK9_like 121 405 - -
Csa01g02837 564 MobiDBLite consensus disorder prediction 415 454 - -
Csa01g02837 564 Coils Coil 48 68 - -
Csa01g02837 564 SUPERFAMILY Protein kinase-like (PK-like) 115 409 IPR011009 -
Csa01g02837 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 241 253 IPR008271 GO:0004672|GO:0006468
Csa01g02837 564 MobiDBLite consensus disorder prediction 13 31 - -
Csa01g02837 564 MobiDBLite consensus disorder prediction 1 31 - -
Csa01g02837 564 ProSitePatterns Protein kinases ATP-binding region signature. 127 150 IPR017441 GO:0005524
Csa01g02837 564 ProSiteProfiles Protein kinase domain profile. 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02837 564 Pfam Protein kinase domain 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02837 564 SMART serkin_6 121 405 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa01g02837 Csa02g00346 CCT
Csa01g02837 Csa02g00346 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02837 Csa-Chr1:24909570 Csa03g01943 Csa-Chr3:15340938 0 dispersed
Csa03g03950 Csa-Chr3:34536277 Csa01g02837 Csa-Chr1:24909570 1.23E-116 transposed
Csa04g01219 Csa-Chr4:10816402 Csa01g02837 Csa-Chr1:24909570 6.18E-103 transposed
Csa06g00286 Csa-Chr6:2076061 Csa01g02837 Csa-Chr1:24909570 1.73E-152 transposed
Csa03g01412 Csa-Chr3:10610724 Csa01g02837 Csa-Chr1:24909570 0 transposed
Csa01g02837 Csa-Chr1:24909570 Csa02g00346 Csa-Chr2:2385123 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77840 PF00069 Pkinase 4.80E-68 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02837 K08819 - csv:101215893 1108.98