Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02837 | ATGGGGTGTTTGGTTAGCCGAGAGGCGTCTTCTAGAAGTGTAGAAGCCCCTGTAGATAAGGGGAAGAGGAATCAAATTACTGAGTCTCGTGTCCAAGGCGAGATTGTTCAGGAGAAAGAAGTAGAACGTGTGAGTGTTAATGTAGAGGAGCATGTAAACGTGAACAAGGAAGAGGAACAGAAGGCTGATGTGGTTCAGGATCGCCCACGAGCTGAACGGAGAAAGTCGAGGAAGGTTCCGAGGCCAACTAACTTGCCAAACCATTCCCAGGGAGAGCAAGTTGCTGCTGGATGGCCTTCTTGGCTCACAGCTGTTTGCGGAGAGGCTCTCAATGGTTGGATTCCTCGGAAGGCTGATACATTTGAAAAGATTGATAAGATTGGACAAGGAACGTATAGCAATGTGTATAAAGCTAAAGATATACTTACAGGTAAAATTGTTGCACTGAAGAAGGTTCGATTTGACAATCTGGAACCTGAAAGTGTGAAATTTATGGCTAGAGAGATTCTCATCCTTAGGAGATTAAATCATAACAATGTTGTGAAATTAGAAGGGTTGGTTACATCACGGATGTCATGTAGTTTATACTTGGTGTTTGAGTACATGGAACATGATTTAGCAGGTCTTGCTGCGAATCCATCAATCAAATTTACTGAATCTCAGGTTAAATGTTTTATGCAACAACTGTTATCTGGATTGGAACACTGTCATAATCGCCGGGTGCTTCACCGTGACATTAAAGGATCTAATCTTCTCATTGATAGTGGAGGAGTGCTTAAGATTGCTGACTTTGGATTGGCTTCTTTCTTTGATCCAAATCACAAGCACCCTATGACTAGTCGGGTGGTTACCTTATGGTATCGACCTCCTGAACTTCTTCTTGGAGCAACTGATTATGGAGTAGGTGTAGACCTCTGGAGTGCTGGGTGTATACTGGCAGAGTTATTAGCTGGGAGGCCTATTATGCCAGGTCGTACAGAGGTAGAGCAACTACACAAGATATACAAGCTTTGTGGCTCCCCTTCAGATGAATATTGGAAAAGAGCAAAACTTCCAAATGCAACCTTATTTAAGCCCAGAGACCCTTATAAGAGATGTATAAAAGAGACATTTAAAGATTTTCCCCCATCTTCTCTGCCCCTTATAGAAACGCTTCTTGCAATTGATCCAGCAGAACGAAAGACAGCAACAGATGCATTAAATAGCGAGTTCTTCATGACAGAACCTTTAGCCTGCAAACCCTCCAACCTTCCAAAATATCCTCCCAGTAAGGAGATGGATGCTAGAAGACGGGATGACGAAGCTCGAAGATTAAGAGCAGCTAGTAAAGCTCAAGGAGATGGAGCAAAGAAAACACGCACACGTGTTAGGGCTATTCCAGCTCCCGAAGCCAATGCCGAAATACAAACAAATATTGACAGAAGGCGCTTAATTACACATGCTAATGCAAAGAGCAAAAGTGAAAAGTTCCCCCCACCACACCAAGATGGAGCGCTTGGCTTTACGCTAGGATATTCACGTCATATCGACCCAGCTGGTGTTCCTCCCGACATACCGTTCAGCTCGACGTTATTCACTTATTCTAAGGAACCAATCCAAGCTTGGTCTGGTCCACTAGTCCCGGGTGCTGGCACTGATGCTCCTCATAGACAGAAGAAGCATGTAGGAGGTAAAGGCAAGAAAATCATGGTCTAA | 1695 | 44.01 | MGCLVSREASSRSVEAPVDKGKRNQITESRVQGEIVQEKEVERVSVNVEEHVNVNKEEEQKADVVQDRPRAERRKSRKVPRPTNLPNHSQGEQVAAGWPSWLTAVCGEALNGWIPRKADTFEKIDKIGQGTYSNVYKAKDILTGKIVALKKVRFDNLEPESVKFMAREILILRRLNHNNVVKLEGLVTSRMSCSLYLVFEYMEHDLAGLAANPSIKFTESQVKCFMQQLLSGLEHCHNRRVLHRDIKGSNLLIDSGGVLKIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIYKLCGSPSDEYWKRAKLPNATLFKPRDPYKRCIKETFKDFPPSSLPLIETLLAIDPAERKTATDALNSEFFMTEPLACKPSNLPKYPPSKEMDARRRDDEARRLRAASKAQGDGAKKTRTRVRAIPAPEANAEIQTNIDRRRLITHANAKSKSEKFPPPHQDGALGFTLGYSRHIDPAGVPPDIPFSSTLFTYSKEPIQAWSGPLVPGAGTDAPHRQKKHVGGKGKKIMV* | 565 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 24909570 | 24919473 | - | CsaV3_1G039530.1 | Csa01g02837 | 517334 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02837 | 564 | PANTHER | OS01G0367700 PROTEIN | 49 | 550 | - | - | |
Csa01g02837 | 564 | MobiDBLite | consensus disorder prediction | 50 | 93 | - | - | |
Csa01g02837 | 564 | MobiDBLite | consensus disorder prediction | 423 | 454 | - | - | |
Csa01g02837 | 564 | Gene3D | Phosphorylase Kinase; domain 1 | 108 | 203 | - | - | |
Csa01g02837 | 564 | MobiDBLite | consensus disorder prediction | 50 | 73 | - | - | |
Csa01g02837 | 564 | PANTHER | CELL DIVISION PROTEIN KINASE | 49 | 550 | - | - | |
Csa01g02837 | 564 | MobiDBLite | consensus disorder prediction | 545 | 564 | - | - | |
Csa01g02837 | 564 | Gene3D | Transferase(Phosphotransferase) domain 1 | 204 | 444 | - | - | |
Csa01g02837 | 564 | CDD | STKc_CDK9_like | 121 | 405 | - | - | |
Csa01g02837 | 564 | MobiDBLite | consensus disorder prediction | 415 | 454 | - | - | |
Csa01g02837 | 564 | Coils | Coil | 48 | 68 | - | - | |
Csa01g02837 | 564 | SUPERFAMILY | Protein kinase-like (PK-like) | 115 | 409 | IPR011009 | - | |
Csa01g02837 | 564 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 241 | 253 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g02837 | 564 | MobiDBLite | consensus disorder prediction | 13 | 31 | - | - | |
Csa01g02837 | 564 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
Csa01g02837 | 564 | ProSitePatterns | Protein kinases ATP-binding region signature. | 127 | 150 | IPR017441 | GO:0005524 | |
Csa01g02837 | 564 | ProSiteProfiles | Protein kinase domain profile. | 121 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g02837 | 564 | Pfam | Protein kinase domain | 121 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g02837 | 564 | SMART | serkin_6 | 121 | 405 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Csa01g02837 | Csa02g00346 | CCT | |
Csa01g02837 | Csa02g00346 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02837 | Csa-Chr1:24909570 | Csa03g01943 | Csa-Chr3:15340938 | 0 | dispersed | |
Csa03g03950 | Csa-Chr3:34536277 | Csa01g02837 | Csa-Chr1:24909570 | 1.23E-116 | transposed | |
Csa04g01219 | Csa-Chr4:10816402 | Csa01g02837 | Csa-Chr1:24909570 | 6.18E-103 | transposed | |
Csa06g00286 | Csa-Chr6:2076061 | Csa01g02837 | Csa-Chr1:24909570 | 1.73E-152 | transposed | |
Csa03g01412 | Csa-Chr3:10610724 | Csa01g02837 | Csa-Chr1:24909570 | 0 | transposed | |
Csa01g02837 | Csa-Chr1:24909570 | Csa02g00346 | Csa-Chr2:2385123 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77840 | PF00069 | Pkinase | 4.80E-68 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02837 | K08819 | - | csv:101215893 | 1108.98 |