Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa01g02842 | ATGGCCGGAATCCCCTCTGAGGGGTTGGGCGATGATTTCTTCGAGCAGATGCTCGCTGTTCCACCGTCTTACGGCGGCGCTGGTGGCGGCGACATGGTTTCTTTGCCTATGGGACTTCAACTTGGGTCCGGTGGTGGTGGTGGCGGTAACGGTGGAGGAATGGGTATGCCGTTAGGGTTGAATTTAGAACAGGGGTTTTTGAGACAAGAGAGGTTTAGAGAAGAGGTTGATGGAGGGCATAATAGTAATTCTAATAATAATGCTTCTTCTTCTTCAACTGCTTCTTCAGGAATCACTGAGAGAGATTCTTCAATGCAGCATATGACAAGCTTGTTTCCGACCTTTGGACATTTGCAAACTCAACAACTCCGACCACCGCCGCCGTTGCATCTCCACCAGCCCTTCCACAATCAGACGAATACCGGGACGGTTGCTGCCATACCACAACCACCTCAAGTTCGTCCTAGAGTTCGAGCAAGACGAGGGCAAGCAACCGATCCTCACAGTATTGCAGAAAGGTTGCGTCGAGAAAGAATTGCAGAAAGAATGAAGGCCTTGCAAGAGTTAGTTCCTAGTTGCAATAAGACTGATCGAGCGGCAATGCTCGATGAAATTGTGGATTATGTAAAGTTTCTTAGGCTTCAAGTTAAGGTTTTAAGCATGAGTAGACTAGGCGGGGCTGGTGCGGTGGCTCAACTTGTGGCCGATGTGCCTCTATCATCAGTCGAGGGAGAAGGCATTGAGAGTGGTAACAATCAGCAAGCATGGGAAAAGTGGTCAAGTGATGGCACAGAGCAACAAGTAGCCAAATTAATGGAAGAAGATGTGGGAGCTGCCATGCAGTTCCTTCAATCTAAAGCTCTATGCATCATGCCCATCTCATTAGCCTCAGCAATTTTCAGGACACACCAAGCAGATCCACAAATCTTAGTCAAGCCAGAAATGAACACTCCCTAG | 957 | 48.38 | MAGIPSEGLGDDFFEQMLAVPPSYGGAGGGDMVSLPMGLQLGSGGGGGGNGGGMGMPLGLNLEQGFLRQERFREEVDGGHNSNSNNNASSSSTASSGITERDSSMQHMTSLFPTFGHLQTQQLRPPPPLHLHQPFHNQTNTGTVAAIPQPPQVRPRVRARRGQATDPHSIAERLRRERIAERMKALQELVPSCNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAQLVADVPLSSVEGEGIESGNNQQAWEKWSSDGTEQQVAKLMEEDVGAAMQFLQSKALCIMPISLASAIFRTHQADPQILVKPEMNTP* | 319 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 24945063 | 24953384 | + | CsaV3_1G039580.1 | Csa01g02842 | 517339 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa01g02842 | 318 | Pfam | Helix-loop-helix DNA-binding domain | 168 | 212 | IPR011598 | GO:0046983 | |
| Csa01g02842 | 318 | MobiDBLite | consensus disorder prediction | 142 | 167 | - | - | |
| Csa01g02842 | 318 | Gene3D | - | 156 | 213 | IPR036638 | GO:0046983 | |
| Csa01g02842 | 318 | PANTHER | DEHYDROGENASE, PUTATIVE, EXPRESSED-RELATED | 7 | 307 | - | - | |
| Csa01g02842 | 318 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 161 | 222 | IPR036638 | GO:0046983 | |
| Csa01g02842 | 318 | SMART | finulus | 169 | 218 | IPR011598 | GO:0046983 | |
| Csa01g02842 | 318 | MobiDBLite | consensus disorder prediction | 76 | 101 | - | - | |
| Csa01g02842 | 318 | MobiDBLite | consensus disorder prediction | 79 | 101 | - | - | |
| Csa01g02842 | 318 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 163 | 212 | IPR011598 | GO:0046983 | |
| Csa01g02842 | 318 | PANTHER | TRANSCRIPTION FACTOR BHLH83-RELATED | 7 | 307 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g02842 | Csa-Chr1:24945063 | Csa07g01674 | Csa-Chr7:17195587 | 1.00E-93 | dispersed | |
| Csa06g02321 | Csa-Chr6:20836169 | Csa01g02842 | Csa-Chr1:24945063 | 1.46E-19 | dispersed | |
| Csa01g02842 | Csa-Chr1:24945063 | Csa01g01870 | Csa-Chr1:15708212 | 2.00E-62 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30806 | PF00010 | HLH | 7.00E-08 | No_clan | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa01g02842 | - | - | csv:101216855 | 523.472 |