Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02849 ATGGACTTCAGAAATTGGATGATATGGTTTGTGTTTATGGTGTGTTTATTGAGATGTGGATGGAGGTTTTTGAACTGGATTTGGTTAACGCCAAAGAAACTTGAGAAGTGCTTGAGAGAACAAGGATTCGCCGGAAATTCTTACCGTCTTTACTCCGGCGACTTGAAGGACTTAGTCGCCATGTCGGAAGAAGCTAAATCCAAACCCATGAACTTCTCGCATGATATTGCTCCACGTGTCATCCCATCCATACATCATACCATTGAGAAATATGGGAAGAATTCATTCGTATGGCTTGGACCAATTCCAAGAGTGTTCATCATGGACCCTGAGCAATTGAAAGCTGCTCTTTCTCTATACAATGACTTTCAAAAGCCAACCATTAACCCTCTTGTTAAGTTGCTTTTTGATGGACTTATTAATCATGAAGGAGAAAAATGGGTTAAACATAGAAAAATAGTCAACCATGCCTTTCATTTTGAGAAGTTGAAGGACATGGTGCCAACAATGTTTGAGAGTTGCAATGAGATGATTAACACATGGGAAAAAATGGTATCAAAAGATGGATCTTGTGAATTGGATGTGATGCCTTATTTACAAAATTTGGCGGCGGATGTCATTTCTCGAACAGCATTTGGAAGTACTTACGAAGAAGGAAAAGTTATATTTAATCATTTCAAAGAATTGATTTGTTTGACCATTCAAGCTAGTAATATTGTTTACATACCAGGACGGAGGTTTCTACCAACAAAGTCCAACAATAGAATGAAAAAGATAACTAAAGAAATAAAAACTATGCTCATGAATGTTATCGATAAAAGGCAAAGAACAATGAAGGAAGGTGAAACTATGCAAAGTGATGATCTCTTAGGCATTCTCTTAGAATCAAATTTCAATGAAATTAAAGAACATGGAAATGTGAACCTTGGAATGAGCATAAATGATTTGATTGAAGAATGCAAAATTTTTTATTTTGCTGGCCAAGAAACCACAGCAGTGCTATTAGTTTGGACCATGATTTTGTTGGGTTCATATACAAAATGGCAAGATAGAGCAAGAGCTGAAGTCCTACAAGTCTTTGGCAACAACAAACCAGATTTTGATGGTTTAAATCGACTAAAAATTGTAACTATGATTTTGAACGAGGTTTTGAGATTATACTCACCAGCAAGTGTGCTTAGTCGTAAGCTTGTTAAAAGAGAAACAAAGCTTGGAAATTTTACATTTCCAAGTGGAGTGATGTTGAGCTTCCCTGTTATTCTTATCCATCTTGATAAAGAGATTTGGGGTGAAGATGCAAATGAATTTAATCCAGAAAGATTTGCGGAGGGAGTTTCAAAAGCAACCAAAAACCAAACCGGATTCTTCCCTTTCGGCTGGGGTCCTCGAATATGTATTGGACAAAATTTTGCTATGATTGAAGCCAAAATTGCATTGTCCATCATTTTACAACACTTCTCATTTGAGCTTTCTCCTTCCTATACTCATGCTCCTATATCCATTTTAACTACTCAACCTCAGCATGGAGCTCATATCATCCTACATAAGCTTTAG 1554 36.74 MDFRNWMIWFVFMVCLLRCGWRFLNWIWLTPKKLEKCLREQGFAGNSYRLYSGDLKDLVAMSEEAKSKPMNFSHDIAPRVIPSIHHTIEKYGKNSFVWLGPIPRVFIMDPEQLKAALSLYNDFQKPTINPLVKLLFDGLINHEGEKWVKHRKIVNHAFHFEKLKDMVPTMFESCNEMINTWEKMVSKDGSCELDVMPYLQNLAADVISRTAFGSTYEEGKVIFNHFKELICLTIQASNIVYIPGRRFLPTKSNNRMKKITKEIKTMLMNVIDKRQRTMKEGETMQSDDLLGILLESNFNEIKEHGNVNLGMSINDLIEECKIFYFAGQETTAVLLVWTMILLGSYTKWQDRARAEVLQVFGNNKPDFDGLNRLKIVTMILNEVLRLYSPASVLSRKLVKRETKLGNFTFPSGVMLSFPVILIHLDKEIWGEDANEFNPERFAEGVSKATKNQTGFFPFGWGPRICIGQNFAMIEAKIALSIILQHFSFELSPSYTHAPISILTTQPQHGAHIILHKL* 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 24999782 25004325 + CsaV3_1G039650.1 Csa01g02849 517346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02849 517 PRINTS E-class P450 group I signature 88 107 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS E-class P450 group I signature 202 220 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS E-class P450 group I signature 315 332 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS E-class P450 group I signature 335 361 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS E-class P450 group I signature 419 443 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS E-class P450 group I signature 455 465 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS E-class P450 group I signature 465 488 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 SUPERFAMILY Cytochrome P450 77 515 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 Gene3D Cytochrome P450 36 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 458 467 IPR017972 GO:0005506|GO:0016705
Csa01g02849 517 PANTHER CYTOCHROME 11 514 - -
Csa01g02849 517 PRINTS P450 superfamily signature 326 343 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS P450 superfamily signature 378 389 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS P450 superfamily signature 456 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PRINTS P450 superfamily signature 465 476 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 Pfam Cytochrome P450 87 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Csa01g02849 517 PANTHER CYTOCHROME P450 FAMILY MEMBER 11 514 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02849 Csa-Chr1:24999782 Csa04g02242 Csa-Chr4:23069281 0 dispersed
Csa03g04192 Csa-Chr3:36758169 Csa01g02849 Csa-Chr1:24999782 7.00E-132 dispersed
Csa01g02849 Csa-Chr1:24999782 Csa02g00167 Csa-Chr2:1164961 5.09E-138 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02849 - - csv:101213974 1059.28