Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa01g02850 | ATGAAACACATTTTCAAGAAGTTTCATATAGGAAGCAATCACGAGCCGAATCGGTCCAACGAGAATCCGTCGCCTGTAGCAGCAGCGTCGTCTTCACCATGTGTTTCTGATAACCGTCCTGCAACTGCTCCGGGTCAGACTTCCGGTAACTCTCCCCCCAGTCCTTCATCGTCGCCGTCGCTGGCAACAACTTCTCCAGGGGGTGGAAATGTAACTCAGGTTTCGGTACCTCCCAATCGGTCCGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCATCCAATTCGGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCGACACTTTTGAGCTTGGGAAATCATCGGATTGATTCTACTGCCAGGGACCAGGGAGATGCTGCCGAGGTGCTCTCGAGACAATATTGGGAATACAATGTGCTTGACTATGAAGAAAAAGTGGTCAATGGGTTTTATGATGTTCTTTCTACGGATTCAGCAGTCCAAGGAAAAATTCCATCGCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTTGTGATGGTCAATATGACTATTGATCCTGCTCTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGGACTGAGGTCAGGGTTTTGGTTCAGAGGCTTGCCGAGCTTGTTATGGGACATATGGGGGGACCTGTAAAGGACGCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCTATCGGTTCCATTAATATTGGCCTCTCAAGACATCGTGCATTGCTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACCGGTGTTGAAGAAGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTCTACCAGCAGACATATTTAATGCAAAGGACACTACTAACTTTAAGCCTTACAACCCTAAAGTAAGCAGAATTCCTTCTCTTCACCACTCCAATGATGTTGGAATTTCTTCTGCGAAACCAACATCGGGACTTGAGGAAGGCAGCAGTCAAAACTTTGGAGCAGAGGCCATCTCACTGATGGATGGGAAACTGGGCTATGGAAGGACAGAGTCTGTGCCATCAAGCTCAGGTACTGGGACTTCTCGATACAAAGGGGCCCATTTTGGTGACGGTAATGTTCGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGTTCCGAGGATTCCAAAAATCTTTTTGCGGATCTTAATCCTTTCCTAATAAGAGGAACTGGAAAAAGTTTCATTCCTAACAAGTTCTCAGATAATAAAAGTGAGGAGCTCCAGAAACCTACTATTGGGCATCCTCCTGTACCATTATGGAAAAATCGGTTTGCTTTTAATGCAGTTCCCAATAAAAATGAGTACGATTATATGGAGGGCCGTTTTCCAAGAATCAGCCGTGGGCCTAATGATCAAAACATGGCATTATCTTCTTCCAATTCTACTGGCTCTGAAAGTGTTAAACCTGGTGGTTCAGGAACATCTAATGACTTGAGTGCATCGGTTAGAAGTGCTGAAGTTGGAAGTTCTTCATCAAATATGTACGCACAGCCGGCATTTGGAATGATGGAGCCTAATATTTTGCCCTTCATTGACGAACAGAACAGAAAGTCCAATGGAGAACATTCTGGAAATACAGACATGGAGGATGAGAAGGTAGATGCTGTTGATGGACGAGACAATTTAATCAGATTTGATAACCGTAGAAAGTTCACATACGAGAGATCTGTTGGAACCAATTTGATATTGAAGGATTCGGGAAATCCTGGCCTATTGGTCAATCCAAGTTCAAATAGGTTTGAGCAAGTTTATGATGATGTGGACGTAGGTCAATGTGAAATCCAATGGGAGGACCTCGTTATTGGTGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACCATGCTGATTGGAATGACACAGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGTGCTGCTTTAGCTGAGTTCAAAAGAGAAGTATTGATAATGCGGCAGCTGCGTCATCCGAACATTGTTCTTTTTATGGGTGCTGTCACTCGTCCTCCCAACCTTTCCATTGTTACTGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCACCGTCCAAATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTGGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTAATCCAACAATTGTTCACCGAGATCTGAAGTCACCAAATCTTTTGGTTGATAAGAACTGGAATGTGAAGGTGTCAGATTTTGGGTTGTCACGCCTAAAGCACAATACATTTTTATCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTTCTTCGGAATGAGCCTTCAAATGAGAAGTGCGATGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTGAGACTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGAGCTGTAGGTTTCCGTAATCAGCGACTCGAAATACCCAAGGAAGTGGATCCCACGGTTGCAAGGATAATCTGGGAATGCTGGCAAACTGATCCGAACCTGCGTCCCTCATTCTCACAATTAGCCAACATTCTGAAGCCACTGCAGCGGCTCGTCCTCCCACCACATTCGGACCAGCCAAGTTCGTCAGTACTGCAAGAGATCTCTGTAAATTCTACACCTTAG | 2841 | 44.35 | MKHIFKKFHIGSNHEPNRSNENPSPVAAASSSPCVSDNRPATAPGQTSGNSPPSPSSSPSLATTSPGGGNVTQVSVPPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTARDQGDAAEVLSRQYWEYNVLDYEEKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTIDPALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDAHFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIIKLEDEREFLVDLMAAPGTLLPADIFNAKDTTNFKPYNPKVSRIPSLHHSNDVGISSAKPTSGLEEGSSQNFGAEAISLMDGKLGYGRTESVPSSSGTGTSRYKGAHFGDGNVRLNVNVVPFGQSSEDSKNLFADLNPFLIRGTGKSFIPNKFSDNKSEELQKPTIGHPPVPLWKNRFAFNAVPNKNEYDYMEGRFPRISRGPNDQNMALSSSNSTGSESVKPGGSGTSNDLSASVRSAEVGSSSSNMYAQPAFGMMEPNILPFIDEQNRKSNGEHSGNTDMEDEKVDAVDGRDNLIRFDNRRKFTYERSVGTNLILKDSGNPGLLVNPSSNRFEQVYDDVDVGQCEIQWEDLVIGERIGLGSYGEVYHADWNDTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPNCQIDEKRRIKMALDVARGMNCLHTSNPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFRNQRLEIPKEVDPTVARIIWECWQTDPNLRPSFSQLANILKPLQRLVLPPHSDQPSSSVLQEISVNSTP* | 947 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 25004539 | 25015273 | - | CsaV3_1G039660.1 | Csa01g02850 | 517347 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa01g02850 | 946 | Gene3D | Transferase(Phosphotransferase) domain 1 | 744 | 924 | - | - | |
Csa01g02850 | 946 | SMART | serkin_6 | 665 | 920 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g02850 | 946 | SUPERFAMILY | Protein kinase-like (PK-like) | 656 | 934 | IPR011009 | - | |
Csa01g02850 | 946 | MobiDBLite | consensus disorder prediction | 1 | 82 | - | - | |
Csa01g02850 | 946 | ProSitePatterns | Protein kinases ATP-binding region signature. | 671 | 693 | IPR017441 | GO:0005524 | |
Csa01g02850 | 946 | CDD | STKc_MAP3K-like | 671 | 917 | - | - | |
Csa01g02850 | 946 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 784 | 796 | IPR008271 | GO:0004672|GO:0006468 | |
Csa01g02850 | 946 | Pfam | Protein tyrosine and serine/threonine kinase | 666 | 916 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g02850 | 946 | PANTHER | SERINE/THREONINE-PROTEIN KINASE EDR1 | 410 | 938 | - | - | |
Csa01g02850 | 946 | PANTHER | SERINE/THREONINE-PROTEIN KINASE EDR1 | 76 | 413 | - | - | |
Csa01g02850 | 946 | MobiDBLite | consensus disorder prediction | 508 | 556 | - | - | |
Csa01g02850 | 946 | Gene3D | Phosphorylase Kinase; domain 1 | 658 | 742 | - | - | |
Csa01g02850 | 946 | ProSiteProfiles | Protein kinase domain profile. | 665 | 921 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Csa01g02850 | 946 | MobiDBLite | consensus disorder prediction | 516 | 556 | - | - | |
Csa01g02850 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 739 | 752 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g02850 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 778 | 796 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g02850 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 825 | 835 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g02850 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 844 | 866 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g02850 | 946 | PRINTS | Tyrosine kinase catalytic domain signature | 888 | 910 | IPR001245 | GO:0004672|GO:0006468 | |
Csa01g02850 | 946 | MobiDBLite | consensus disorder prediction | 15 | 82 | - | - | |
Csa01g02850 | 946 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 76 | 413 | - | - | |
Csa01g02850 | 946 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 410 | 938 | - | - | |
Csa01g02850 | 946 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 138 | 332 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa01g02850 | Csa-Chr1:25004539 | Csa04g02535 | Csa-Chr4:25059511 | 1.01E-70 | dispersed | |
Csa03g02936 | Csa-Chr3:27976091 | Csa01g02850 | Csa-Chr1:25004539 | 4.00E-20 | dispersed | |
Csa01g02850 | Csa-Chr1:25004539 | Csa03g03375 | Csa-Chr3:30479921 | 2.20E-32 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
77841 | PF07714 | PK_Tyr_Ser-Thr | 1.10E-63 | CL0016 | Csa | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa01g02850 | - | - | csv:101218274 | 1863.97 |