Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02850 ATGAAACACATTTTCAAGAAGTTTCATATAGGAAGCAATCACGAGCCGAATCGGTCCAACGAGAATCCGTCGCCTGTAGCAGCAGCGTCGTCTTCACCATGTGTTTCTGATAACCGTCCTGCAACTGCTCCGGGTCAGACTTCCGGTAACTCTCCCCCCAGTCCTTCATCGTCGCCGTCGCTGGCAACAACTTCTCCAGGGGGTGGAAATGTAACTCAGGTTTCGGTACCTCCCAATCGGTCCGATTACTTTTCTTCAGAGGAGGAGTTTCAGGTTCAGCTTGCCCTAGCTATTAGCGCATCCAATTCGGACTTCCGGGATGATCCGGAGAAGGATCAAATTCGAGCTGCGACACTTTTGAGCTTGGGAAATCATCGGATTGATTCTACTGCCAGGGACCAGGGAGATGCTGCCGAGGTGCTCTCGAGACAATATTGGGAATACAATGTGCTTGACTATGAAGAAAAAGTGGTCAATGGGTTTTATGATGTTCTTTCTACGGATTCAGCAGTCCAAGGAAAAATTCCATCGCTATCTGATATTGAAGCAAGCTTTGGTAGTTCTGGCTTTGAAGTTGTGATGGTCAATATGACTATTGATCCTGCTCTAGAAGAGCTAGTGCAAATTGCTCAATGTATTGCAGATTGCCCTGGGACTGAGGTCAGGGTTTTGGTTCAGAGGCTTGCCGAGCTTGTTATGGGACATATGGGGGGACCTGTAAAGGACGCCCATTTTATGCTAGCAAGGTGGATGGAAAGAAGCACAGAGTTAAGGACTTCTCTTCACACCAGTGTATTGCCTATCGGTTCCATTAATATTGGCCTCTCAAGACATCGTGCATTGCTTTTCAAGGTGTTAGCTGACAGTATCAAGATGCCTTGTAGGCTTGTTAAAGGTAGTCACTATACCGGTGTTGAAGAAGATGCTGTCAACATTATAAAGTTGGAGGATGAAAGGGAGTTTTTGGTTGATCTAATGGCAGCTCCTGGAACACTTCTACCAGCAGACATATTTAATGCAAAGGACACTACTAACTTTAAGCCTTACAACCCTAAAGTAAGCAGAATTCCTTCTCTTCACCACTCCAATGATGTTGGAATTTCTTCTGCGAAACCAACATCGGGACTTGAGGAAGGCAGCAGTCAAAACTTTGGAGCAGAGGCCATCTCACTGATGGATGGGAAACTGGGCTATGGAAGGACAGAGTCTGTGCCATCAAGCTCAGGTACTGGGACTTCTCGATACAAAGGGGCCCATTTTGGTGACGGTAATGTTCGACTGAATGTCAATGTAGTTCCATTTGGTCAAAGTTCCGAGGATTCCAAAAATCTTTTTGCGGATCTTAATCCTTTCCTAATAAGAGGAACTGGAAAAAGTTTCATTCCTAACAAGTTCTCAGATAATAAAAGTGAGGAGCTCCAGAAACCTACTATTGGGCATCCTCCTGTACCATTATGGAAAAATCGGTTTGCTTTTAATGCAGTTCCCAATAAAAATGAGTACGATTATATGGAGGGCCGTTTTCCAAGAATCAGCCGTGGGCCTAATGATCAAAACATGGCATTATCTTCTTCCAATTCTACTGGCTCTGAAAGTGTTAAACCTGGTGGTTCAGGAACATCTAATGACTTGAGTGCATCGGTTAGAAGTGCTGAAGTTGGAAGTTCTTCATCAAATATGTACGCACAGCCGGCATTTGGAATGATGGAGCCTAATATTTTGCCCTTCATTGACGAACAGAACAGAAAGTCCAATGGAGAACATTCTGGAAATACAGACATGGAGGATGAGAAGGTAGATGCTGTTGATGGACGAGACAATTTAATCAGATTTGATAACCGTAGAAAGTTCACATACGAGAGATCTGTTGGAACCAATTTGATATTGAAGGATTCGGGAAATCCTGGCCTATTGGTCAATCCAAGTTCAAATAGGTTTGAGCAAGTTTATGATGATGTGGACGTAGGTCAATGTGAAATCCAATGGGAGGACCTCGTTATTGGTGAAAGGATTGGACTAGGTTCATATGGAGAAGTCTACCATGCTGATTGGAATGACACAGAGGTTGCTGTGAAGAAATTCTTAGACCAGGATTTTTCTGGTGCTGCTTTAGCTGAGTTCAAAAGAGAAGTATTGATAATGCGGCAGCTGCGTCATCCGAACATTGTTCTTTTTATGGGTGCTGTCACTCGTCCTCCCAACCTTTCCATTGTTACTGAGTTTCTTCCAAGAGGAAGCTTGTACCGGATCATTCACCGTCCAAATTGTCAAATTGATGAAAAGCGCAGAATAAAAATGGCCCTGGATGTGGCAAGGGGCATGAATTGCTTGCATACAAGTAATCCAACAATTGTTCACCGAGATCTGAAGTCACCAAATCTTTTGGTTGATAAGAACTGGAATGTGAAGGTGTCAGATTTTGGGTTGTCACGCCTAAAGCACAATACATTTTTATCATCCAAATCAACTGGAGGAACGCCTGAGTGGATGGCACCAGAAGTTCTTCGGAATGAGCCTTCAAATGAGAAGTGCGATGTTTATAGCTTTGGAATCATTCTATGGGAACTTGCTACATTGAGACTGCCTTGGAGTGGGATGAATCCTATGCAAGTTGTTGGAGCTGTAGGTTTCCGTAATCAGCGACTCGAAATACCCAAGGAAGTGGATCCCACGGTTGCAAGGATAATCTGGGAATGCTGGCAAACTGATCCGAACCTGCGTCCCTCATTCTCACAATTAGCCAACATTCTGAAGCCACTGCAGCGGCTCGTCCTCCCACCACATTCGGACCAGCCAAGTTCGTCAGTACTGCAAGAGATCTCTGTAAATTCTACACCTTAG 2841 44.35 MKHIFKKFHIGSNHEPNRSNENPSPVAAASSSPCVSDNRPATAPGQTSGNSPPSPSSSPSLATTSPGGGNVTQVSVPPNRSDYFSSEEEFQVQLALAISASNSDFRDDPEKDQIRAATLLSLGNHRIDSTARDQGDAAEVLSRQYWEYNVLDYEEKVVNGFYDVLSTDSAVQGKIPSLSDIEASFGSSGFEVVMVNMTIDPALEELVQIAQCIADCPGTEVRVLVQRLAELVMGHMGGPVKDAHFMLARWMERSTELRTSLHTSVLPIGSINIGLSRHRALLFKVLADSIKMPCRLVKGSHYTGVEEDAVNIIKLEDEREFLVDLMAAPGTLLPADIFNAKDTTNFKPYNPKVSRIPSLHHSNDVGISSAKPTSGLEEGSSQNFGAEAISLMDGKLGYGRTESVPSSSGTGTSRYKGAHFGDGNVRLNVNVVPFGQSSEDSKNLFADLNPFLIRGTGKSFIPNKFSDNKSEELQKPTIGHPPVPLWKNRFAFNAVPNKNEYDYMEGRFPRISRGPNDQNMALSSSNSTGSESVKPGGSGTSNDLSASVRSAEVGSSSSNMYAQPAFGMMEPNILPFIDEQNRKSNGEHSGNTDMEDEKVDAVDGRDNLIRFDNRRKFTYERSVGTNLILKDSGNPGLLVNPSSNRFEQVYDDVDVGQCEIQWEDLVIGERIGLGSYGEVYHADWNDTEVAVKKFLDQDFSGAALAEFKREVLIMRQLRHPNIVLFMGAVTRPPNLSIVTEFLPRGSLYRIIHRPNCQIDEKRRIKMALDVARGMNCLHTSNPTIVHRDLKSPNLLVDKNWNVKVSDFGLSRLKHNTFLSSKSTGGTPEWMAPEVLRNEPSNEKCDVYSFGIILWELATLRLPWSGMNPMQVVGAVGFRNQRLEIPKEVDPTVARIIWECWQTDPNLRPSFSQLANILKPLQRLVLPPHSDQPSSSVLQEISVNSTP* 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25004539 25015273 - CsaV3_1G039660.1 Csa01g02850 517347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02850 946 Gene3D Transferase(Phosphotransferase) domain 1 744 924 - -
Csa01g02850 946 SMART serkin_6 665 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02850 946 SUPERFAMILY Protein kinase-like (PK-like) 656 934 IPR011009 -
Csa01g02850 946 MobiDBLite consensus disorder prediction 1 82 - -
Csa01g02850 946 ProSitePatterns Protein kinases ATP-binding region signature. 671 693 IPR017441 GO:0005524
Csa01g02850 946 CDD STKc_MAP3K-like 671 917 - -
Csa01g02850 946 ProSitePatterns Serine/Threonine protein kinases active-site signature. 784 796 IPR008271 GO:0004672|GO:0006468
Csa01g02850 946 Pfam Protein tyrosine and serine/threonine kinase 666 916 IPR001245 GO:0004672|GO:0006468
Csa01g02850 946 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 410 938 - -
Csa01g02850 946 PANTHER SERINE/THREONINE-PROTEIN KINASE EDR1 76 413 - -
Csa01g02850 946 MobiDBLite consensus disorder prediction 508 556 - -
Csa01g02850 946 Gene3D Phosphorylase Kinase; domain 1 658 742 - -
Csa01g02850 946 ProSiteProfiles Protein kinase domain profile. 665 921 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02850 946 MobiDBLite consensus disorder prediction 516 556 - -
Csa01g02850 946 PRINTS Tyrosine kinase catalytic domain signature 739 752 IPR001245 GO:0004672|GO:0006468
Csa01g02850 946 PRINTS Tyrosine kinase catalytic domain signature 778 796 IPR001245 GO:0004672|GO:0006468
Csa01g02850 946 PRINTS Tyrosine kinase catalytic domain signature 825 835 IPR001245 GO:0004672|GO:0006468
Csa01g02850 946 PRINTS Tyrosine kinase catalytic domain signature 844 866 IPR001245 GO:0004672|GO:0006468
Csa01g02850 946 PRINTS Tyrosine kinase catalytic domain signature 888 910 IPR001245 GO:0004672|GO:0006468
Csa01g02850 946 MobiDBLite consensus disorder prediction 15 82 - -
Csa01g02850 946 PANTHER SERINE-THREONINE PROTEIN KINASE 76 413 - -
Csa01g02850 946 PANTHER SERINE-THREONINE PROTEIN KINASE 410 938 - -
Csa01g02850 946 Pfam Ethylene-responsive protein kinase Le-CTR1 138 332 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02850 Csa-Chr1:25004539 Csa04g02535 Csa-Chr4:25059511 1.01E-70 dispersed
Csa03g02936 Csa-Chr3:27976091 Csa01g02850 Csa-Chr1:25004539 4.00E-20 dispersed
Csa01g02850 Csa-Chr1:25004539 Csa03g03375 Csa-Chr3:30479921 2.20E-32 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77841 PF07714 PK_Tyr_Ser-Thr 1.10E-63 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02850 - - csv:101218274 1863.97