Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02855 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAAGACGACGAGGAATCACTCGACGACGACGACGACGACGAGGAAGAGGAAGAATTGAACGACGAACCTTCTCCTTCCACTTCCTCCGCCGGCCCCCTTCCTGTCACTTCCGTCTCCGCTACCGTCACCATCGCCACTCCCCCGGCTGTCTCCGTTGTTCCTCCTCCTTCGATCGTTTCAATCTCCTCCGCCGATCTGATTCGCCAGCGTCTCGAAACTGCTACCGCTGAGCCCTTGACCTTACCGGGAGAGAAGAAGCCTTTGGATGAGTCCAGGAAGTTGTTTCAACGTCTTTGGACCGATGAGGATGAGATCGAGCTGTTGCAAGGGTTTTTAGATTATACGATGCAGCGTGGTACGACTCATCATCATCAGAATGATACCGCCTTGTTTTATGACCAGATCAAGTCTAAATTACAGTTGGATTTTAACAAGAATCAGCTTGTGGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGTAATGTTATTGGTAAGATTAGCTCTGGTAAGGACTTTAATTTTAAAAGCCCTCACGATCAAGCTACGTTTGAGATCTCTCGCAAGATCTGGAGCAATACTGGCCGAATTGGAGTTGACGACAACGCTTTGGATGACGATGAGCCTGCTCCGACTCCTTATGCTACCTACATGGATCATAGAAACGAAGAAATGATGGCGAATTGTGCAGAGAAGAAACCGACGCCTACTCCGAAATCGCGGAAGCGTTCAAGGCCTGGATCGGGAATTAGAATGGAAGCGCCGCGTTCTTCCCATGAGAATTTGAATAAAGAGAAGAATAGTATCTACCACCACCACCACAACCACAACAACAACAACAACGCCAACAACAACGAAAATGTCAATAACGTAGCGGTATCTGGCTTGATCGAGGAGACGGTGAAGAGCTGCTTGTCGCCATTGTTTAAGGAATTGTTGAATACTTCCATGGGAGGTGGGCTCTGTGGAGGCAGAGCGTTTAGTGGTTTAGCTTTGCATCCAATTCCATTGAGCTTCAGTGGAGCTTCCTTGAATTTCAGTGGTGGATTAGAAATGGGGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAGGTTTATTCGAAGAGGTTGGAGTTGGTTCAGGAGCAAATTAAGACGGCATTAGAAGATTTGAGGAAAGTCTAA 1209 48.06 MDPRNDAVFPDEDLEDDEESLDDDDDDEEEEELNDEPSPSTSSAGPLPVTSVSATVTIATPPAVSVVPPPSIVSISSADLIRQRLETATAEPLTLPGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVDDNALDDDEPAPTPYATYMDHRNEEMMANCAEKKPTPTPKSRKRSRPGSGIRMEAPRSSHENLNKEKNSIYHHHHNHNNNNNANNNENVNNVAVSGLIEETVKSCLSPLFKELLNTSMGGGLCGGRAFSGLALHPIPLSFSGASLNFSGGLEMGDERWRKQQILELEVYSKRLELVQEQIKTALEDLRKV* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25095436 25098174 + CsaV3_1G039710.1 Csa01g02855 517352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02855 402 Pfam Protein of unknown function, DUF573 109 205 IPR007592 GO:0006355
Csa01g02855 402 PANTHER BNAANNG10740D PROTEIN 2 401 - -
Csa01g02855 402 PANTHER BNAANNG10740D PROTEIN-RELATED 2 401 IPR007592 GO:0006355
Csa01g02855 402 MobiDBLite consensus disorder prediction 242 274 - -
Csa01g02855 402 Coils Coil 378 398 - -
Csa01g02855 402 MobiDBLite consensus disorder prediction 1 49 - -
Csa01g02855 402 Coils Coil 159 179 - -
Csa01g02855 402 MobiDBLite consensus disorder prediction 9 36 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02855 Csa-Chr1:25095436 Csa06g03556 Csa-Chr6:28875221 1.02E-26 dispersed
Csa01g02855 Csa-Chr1:25095436 Csa02g00336 Csa-Chr2:2307145 2.58E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30808 PF04504 DUF573 1.40E-34 CL0123 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02855 - - csv:101219457 664.07