Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02855 ATGGATCCTCGCAACGACGCCGTTTTCCCCGACGAAGACCTCGAAGACGACGAGGAATCACTCGACGACGACGACGACGACGAGGAAGAGGAAGAATTGAACGACGAACCTTCTCCTTCCACTTCCTCCGCCGGCCCCCTTCCTGTCACTTCCGTCTCCGCTACCGTCACCATCGCCACTCCCCCGGCTGTCTCCGTTGTTCCTCCTCCTTCGATCGTTTCAATCTCCTCCGCCGATCTGATTCGCCAGCGTCTCGAAACTGCTACCGCTGAGCCCTTGACCTTACCGGGAGAGAAGAAGCCTTTGGATGAGTCCAGGAAGTTGTTTCAACGTCTTTGGACCGATGAGGATGAGATCGAGCTGTTGCAAGGGTTTTTAGATTATACGATGCAGCGTGGTACGACTCATCATCATCAGAATGATACCGCCTTGTTTTATGACCAGATCAAGTCTAAATTACAGTTGGATTTTAACAAGAATCAGCTTGTGGAGAAGCTTCGGAGGTTGAAGAAGAAATATCGTAATGTTATTGGTAAGATTAGCTCTGGTAAGGACTTTAATTTTAAAAGCCCTCACGATCAAGCTACGTTTGAGATCTCTCGCAAGATCTGGAGCAATACTGGCCGAATTGGAGTTGACGACAACGCTTTGGATGACGATGAGCCTGCTCCGACTCCTTATGCTACCTACATGGATCATAGAAACGAAGAAATGATGGCGAATTGTGCAGAGAAGAAACCGACGCCTACTCCGAAATCGCGGAAGCGTTCAAGGCCTGGATCGGGAATTAGAATGGAAGCGCCGCGTTCTTCCCATGAGAATTTGAATAAAGAGAAGAATAGTATCTACCACCACCACCACAACCACAACAACAACAACAACGCCAACAACAACGAAAATGTCAATAACGTAGCGGTATCTGGCTTGATCGAGGAGACGGTGAAGAGCTGCTTGTCGCCATTGTTTAAGGAATTGTTGAATACTTCCATGGGAGGTGGGCTCTGTGGAGGCAGAGCGTTTAGTGGTTTAGCTTTGCATCCAATTCCATTGAGCTTCAGTGGAGCTTCCTTGAATTTCAGTGGTGGATTAGAAATGGGGGATGAGAGGTGGAGGAAGCAGCAGATTTTGGAACTGGAGGTTTATTCGAAGAGGTTGGAGTTGGTTCAGGAGCAAATTAAGACGGCATTAGAAGATTTGAGGAAAGTCTAA 1209 48.06 MDPRNDAVFPDEDLEDDEESLDDDDDDEEEEELNDEPSPSTSSAGPLPVTSVSATVTIATPPAVSVVPPPSIVSISSADLIRQRLETATAEPLTLPGEKKPLDESRKLFQRLWTDEDEIELLQGFLDYTMQRGTTHHHQNDTALFYDQIKSKLQLDFNKNQLVEKLRRLKKKYRNVIGKISSGKDFNFKSPHDQATFEISRKIWSNTGRIGVDDNALDDDEPAPTPYATYMDHRNEEMMANCAEKKPTPTPKSRKRSRPGSGIRMEAPRSSHENLNKEKNSIYHHHHNHNNNNNANNNENVNNVAVSGLIEETVKSCLSPLFKELLNTSMGGGLCGGRAFSGLALHPIPLSFSGASLNFSGGLEMGDERWRKQQILELEVYSKRLELVQEQIKTALEDLRKV* 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25095436 25098174 + CsaV3_1G039710.1 Csa01g02855 517352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02855 402 Pfam Protein of unknown function, DUF573 109 205 IPR007592 GO:0006355
Csa01g02855 402 PANTHER BNAANNG10740D PROTEIN 2 401 - -
Csa01g02855 402 PANTHER BNAANNG10740D PROTEIN-RELATED 2 401 IPR007592 GO:0006355
Csa01g02855 402 MobiDBLite consensus disorder prediction 242 274 - -
Csa01g02855 402 Coils Coil 378 398 - -
Csa01g02855 402 MobiDBLite consensus disorder prediction 1 49 - -
Csa01g02855 402 Coils Coil 159 179 - -
Csa01g02855 402 MobiDBLite consensus disorder prediction 9 36 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02855 - - - csv:101219457 664.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02855 Csa-Chr1:25095436 Csa06g03556 Csa-Chr6:28875221 1.02E-26 dispersed
Csa01g02855 Csa-Chr1:25095436 Csa02g00336 Csa-Chr2:2307145 2.58E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa01g02855 . 50 221 GeBP Transcription Factor Family AT3G04930 60.3 5.7e-45 178.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004320 2 1 4 3 3 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
30808 PF04504 DUF573 1.40E-34 CL0123 Csa TF