Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa01g02868 ATGACGACATCTCTTTCTTCTCTATCTCTTTTCTTTTTTCTGAAACCCATTTCCTTCTTCTTCCTCTTCCTCTGTTTCCACCATGTCAATTCCCAGCTTTACCAACAAGAACACTCTGTTTTGCTCCGACTGAATCAGTTCTGGAAAAACCAAGCTCCCATTACCCATTGGCTTTCCTCAAATGTCTCTCATTGTTCATGGCCGGAGGTTCAATGCACCAACAACTCCGTCACTGCTCTGTTTTTCCCTTCTTACAATTTGAATGGAACCATCCCTTCTTTCATTTCCGATCTCAAAAATCTCACCTACCTTAATTTTCAAGTCAACTACTTCACCGGTGGCTTTCCCACCACTCTTTACAGTTGTTTGAATCTTAATTACCTCGACCTCTCGCAGAATTTACTCACCGGGCCGATTCCTGATGATGTCGACCGCTTGTCTCGCCTCCAGTTTCTTAGTCTCGGTGGAAACAACTTCTCCGGCGAAATTCCGGTATCGATTTCTCGCTTGTCCGAACTTCGGTTCCTTCATCTCTATGTTAATCAATTTAATGGGACGTACCCATCTGAGATTGGTAACTTGTTGAATTTGGAAGAATTGTTATTGGCTTACAATTCGAAACTGGAACCGGCTGAATTGCCTTCCAGTTTTGCGCAATTGAGCAAATTGACGTATTTATGGATGTCAGGGTCGAACGTAATCGGTGAAATTCCTGAATGGATTGGAAATTTGACGGCTCTCGTGCAATTGGATTTGTCGAGGAACAATTTGATTGGGAAAATCCCCAATAGTTTGTTTACGTTGAAGAATCTCAGTTTTGTTTATCTGTTCAAGAACAAACTCTCAGGAGAAATTCCTCAACGGATTGATTCTAAAGCCATCACCGAATACGACTTGTCGGAAAATAATTTGACCGGAAGAATTCCGGCGGCTATCGGGGATTTACAGAACCTGACGGCTCTGCTTCTGTTTACAAATCGTTTACATGGAGAAATCCCAGAAAGCATCGGCCGTCTTCCATTATTAACGGACGTAAGATTGTTCGACAACAATTTAAACGGTACGATACCGCCAGATTTCGGCCGGAATTTGATCCTCAGAGGTTTTCAAGTGAATTCCAATAAACTCACCGGAAGCTTACCGGAGCACTTGTGCTCCGGTGGTCAACTGCTAGGATTGATTGCTTATCAGAATAATCTTAGTGGGGAGTTGCCAAAGTCTCTTGGGAATTGCGATAGCTTGGTTATTGTCGATGTTCACGAGAACAATATTTCAGGGGAAATTCCGGCGGGTTTATGGACGGCTCTGAATTTGACTTATGCAGTGATGAGCAACAATTCTTTCACCGGTGATTTTCCTCAGACGGTTTCGAAGAATCTTGCGAGATTGGAAATCAGTAATAACAAAATTTCAGGGGAAATTCCGTCGGAGTTATCTTCGTTTTGGAATTTGACGGAGTTTGAAGCCAGTAATAATCTGTTGACAGGAAATATTCCTGAAGAATTAACCGCTCTTTCAAAGCTGAACAATCTTTTGCTTGATGAAAATCAAATAAATGGGGAGCTTCCAAAGAAAATCACTTCATGGAAATCATTGCAGCGTCTTAAACTGAATCGAAATCGTTTATCCGGTGAGATACCGGACGAATTTGGCTATTTACCGAACCTTAATGATCTTGATCTCTCGGAGAATCAACTTTCCGGGTCAATTCCGCTTTCGTTGGGGAAGTTGTCGCTGAATTTTCTTGACCTGTCTTCAAATTTTCTGTCCGGGGTTATCCCATCTGCATTTGAAAATTCAATCTTTGCAAGAAGCTTTTTGAACAATCCGAATCTTTGCTCGAACAATGCAGTTCTAAATCTCGATGGTTGTAGTTTGAGAACTCAGAATTCGAGAAAGATTTCGTCGCAGCATCTTGCGCTGATCGTAAGCTTGGGCGTAATCGTAGTGATACTCTTTGTAGTTTCAGCTTTGTTTATAATCAAAATCTATAGGAGAAATGGATACAGAGCAGATGTTGAATGGAAGCTGACCTCATTTCAGAGGTTGAATTTCTCGGAGGCAAATCTTTTATCTGGGCTATCGGAGAACAACGTTATTGGGAGCGGTGGTTCCGGTAAAGTTTATCGGATCCCAGTGAATAGTTTGGGCGAAACAATGGCCGTGAAGAAAATATGGAACAACAGAAAGTCAGACCATAAGCTCGAGAAACAATTCATGGCGGAAGTGAAAATCCTCAGTTCAATTCGACACAACAACATAATCAAACTCCTCTGCTGCGTTTCTTGTGATACTTCAAAGCTCCTAGTTTATGAGTACATGGAGAAGCAAAGCCTCGATAAGTGGCTACATAAGAAGAACTCCCCGCCGAGAATTACAGGGTCAGAACCTATTAGTGGTGTCGCTCTCAATTGGCCGACAAGATTTCAAATTGCAGTAGGGGCAGCGCAAGGCCTCTGTTATATGCACCATGATTGCTCCCCACCGGTAATTCATAGAGATTTAAAGTCTAGCAATATCTTACTAGATTCAGATTTCAATGCCAAAATAGCAGATTTTGGCTTAGCCAAGTTGCTCATAAAGCAAGGGGAACCGGCTTCAGTTTCCGCGGTTGCCGGCTCTTTTGGATACATAGCTCCAGAGTATGCTCAGACACCAAGAATTAACGAGAAGATCGATGTGTTTAGCTTCGGAGTCATTCTTCTGGAGTTGGCAACTGGAAAGGAAGCTCTCGACGGTGATGCAGACTCATCTCTGGCAGAGTGGGCTTGGGAATATATTAAAAAAGGCAAACCAATAGTCGATGCGTTGGATGAGGATGTGAAGGAGCCACAATATCTTGATGAAATGTGCAGTGTTTTCAAACTGGGTGTGATCTGCACTTCTGGTTTGCCAACGCACCGGCCGAACATGAATCAAGCACTGCAAATCTTGATCGGCAGCCGGACCTCAGCTCCCCAAAACCATGGAGACAAAAAACAGGGAGAGTGA 2991 42.9 MTTSLSSLSLFFFLKPISFFFLFLCFHHVNSQLYQQEHSVLLRLNQFWKNQAPITHWLSSNVSHCSWPEVQCTNNSVTALFFPSYNLNGTIPSFISDLKNLTYLNFQVNYFTGGFPTTLYSCLNLNYLDLSQNLLTGPIPDDVDRLSRLQFLSLGGNNFSGEIPVSISRLSELRFLHLYVNQFNGTYPSEIGNLLNLEELLLAYNSKLEPAELPSSFAQLSKLTYLWMSGSNVIGEIPEWIGNLTALVQLDLSRNNLIGKIPNSLFTLKNLSFVYLFKNKLSGEIPQRIDSKAITEYDLSENNLTGRIPAAIGDLQNLTALLLFTNRLHGEIPESIGRLPLLTDVRLFDNNLNGTIPPDFGRNLILRGFQVNSNKLTGSLPEHLCSGGQLLGLIAYQNNLSGELPKSLGNCDSLVIVDVHENNISGEIPAGLWTALNLTYAVMSNNSFTGDFPQTVSKNLARLEISNNKISGEIPSELSSFWNLTEFEASNNLLTGNIPEELTALSKLNNLLLDENQINGELPKKITSWKSLQRLKLNRNRLSGEIPDEFGYLPNLNDLDLSENQLSGSIPLSLGKLSLNFLDLSSNFLSGVIPSAFENSIFARSFLNNPNLCSNNAVLNLDGCSLRTQNSRKISSQHLALIVSLGVIVVILFVVSALFIIKIYRRNGYRADVEWKLTSFQRLNFSEANLLSGLSENNVIGSGGSGKVYRIPVNSLGETMAVKKIWNNRKSDHKLEKQFMAEVKILSSIRHNNIIKLLCCVSCDTSKLLVYEYMEKQSLDKWLHKKNSPPRITGSEPISGVALNWPTRFQIAVGAAQGLCYMHHDCSPPVIHRDLKSSNILLDSDFNAKIADFGLAKLLIKQGEPASVSAVAGSFGYIAPEYAQTPRINEKIDVFSFGVILLELATGKEALDGDADSSLAEWAWEYIKKGKPIVDALDEDVKEPQYLDEMCSVFKLGVICTSGLPTHRPNMNQALQILIGSRTSAPQNHGDKKQGE* 997
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 25199982 25203494 + CsaV3_1G039840.1 Csa01g02868 517365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa01g02868 996 Gene3D Ribonuclease Inhibitor 499 622 IPR032675 -
Csa01g02868 996 Gene3D Transferase(Phosphotransferase) domain 1 774 994 - -
Csa01g02868 996 Pfam Leucine rich repeat 531 587 IPR001611 GO:0005515
Csa01g02868 996 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Csa01g02868 996 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Csa01g02868 996 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 17 986 - -
Csa01g02868 996 SUPERFAMILY RNI-like 298 647 - -
Csa01g02868 996 ProSitePatterns Protein kinases ATP-binding region signature. 700 724 IPR017441 GO:0005524
Csa01g02868 996 PRINTS Leucine-rich repeat signature 125 138 - -
Csa01g02868 996 PRINTS Leucine-rich repeat signature 553 566 - -
Csa01g02868 996 Pfam Leucine Rich Repeat 248 265 IPR001611 GO:0005515
Csa01g02868 996 Pfam Protein kinase domain 696 976 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02868 996 Gene3D Ribonuclease Inhibitor 186 292 IPR032675 -
Csa01g02868 996 Gene3D Ribonuclease Inhibitor 388 498 IPR032675 -
Csa01g02868 996 Gene3D Ribonuclease Inhibitor 293 387 IPR032675 -
Csa01g02868 996 Gene3D Ribonuclease Inhibitor 34 185 IPR032675 -
Csa01g02868 996 SMART LRR_typ_2 315 339 IPR003591 -
Csa01g02868 996 SMART LRR_typ_2 505 529 IPR003591 -
Csa01g02868 996 SMART LRR_typ_2 244 268 IPR003591 -
Csa01g02868 996 SMART LRR_typ_2 553 577 IPR003591 -
Csa01g02868 996 SMART LRR_typ_2 146 170 IPR003591 -
Csa01g02868 996 SMART LRR_typ_2 578 599 IPR003591 -
Csa01g02868 996 ProSiteProfiles Protein kinase domain profile. 694 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02868 996 SMART serkin_6 694 979 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa01g02868 996 SUPERFAMILY Protein kinase-like (PK-like) 688 978 IPR011009 -
Csa01g02868 996 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 17 986 - -
Csa01g02868 996 SUPERFAMILY L domain-like 47 431 - -
Csa01g02868 996 Gene3D Phosphorylase Kinase; domain 1 676 773 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02868 Csa-Chr1:25199982 Csa02g02250 Csa-Chr2:20181979 0 dispersed
Csa01g02866 Csa-Chr1:25191938 Csa01g02868 Csa-Chr1:25199982 1.03E-22 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77842 PF00069 Pkinase 1.60E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa01g02868 - - csv:101214935 1931.76