Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Csa01g02890 | ATGTTAATCAGTGAACGACACCGTCCTGGTCCGGTGGTTCACATCACTCCATTGACTATACCGGAGGAACCTACGGCAACCGAGACGCGGTTTCCTTATCCTTTGAGTGGAATCTCGGTTAGTTCTGATGGCAATGCCAATGGCGGTGATTATTCTCCTTATTATCTTCAGGAAGCTTTAGCGGCACTTCAGCGGTATACGAATGAGTCGGAGATTGAGTCTGATTCGGAGTTGTCTGGACGGGAAGCGGACGTTCCGTTGAATGCTTATTCGTGTGATCATTTTCGGATTTTTGAGTTCAAGGTGAGGAAGTGTACTCGTGGACGTTCTCATGATTGGACGGAGTGTCCGTACGCTCATCCCGGCGAGAAGGCTCGCCGGAGGGATCCGAGGAAGTATCATTACTCTGGTACGGCGTGTCCCGATTTTCGTAAAGGTAGCTGTAAGAAAGGGGATTCATGCGAGTTTGCGCATGGTGTTTTTGAGTGTTGGCTTCATCCTGCTCGTTACAGGACTCAGCCGTGTAAAGATGGAACCAACTGTAGAAGGAGAGTCTGTTTCTTCGCTCATACTCCTGAACAACTTAGGGTTTTGCCTCAGCAGAGTCCGAGAAGCGCGAATTCGCCTGACTCGTATGATGAATCTCCTCTTCGGCAGTCTGTGGATGGATCCTGTTCTAAAACGCTGCCGTTTCTGTCCTCTCCTGTGTCTGTCTCACCGACAGCGACTCCGGTGGACTCACCCCCGTTATCCCCCATGACTCGTTCGCTTGGCCGGTCACTTGGCTCCACTTCCATCAACGAAATGGTCGCATCCCTCCGGAACTTACATCTGAGCAAGGTCAAATCGTTACCATCTTCCTGGAATGTTCAAATTGGCTCTCCTGGTTATCCATCTCGAGTCTGCCATGGATTTTGCAGCCTTCCAACAACTCCAACTCGGGCTCCAACTGGTCATGGTGTTGGACTGCTCGATTTCACAGAGCATGGATTCGAGGAGGAGCCGGTGATGGAGCGAGTCGAATCGGGGAGGGAGCTGAGGGCAAAGATGCTGGAGAAGCTGAGCAAGGAAAATTCGCTGGACTGGGCTGAGTCAAATCCTTCAACCTGCACACCGGATGTTGAATGGGTATCAGAGCTAGTGAAGTGA | 1149 | 51.09 | MLISERHRPGPVVHITPLTIPEEPTATETRFPYPLSGISVSSDGNANGGDYSPYYLQEALAALQRYTNESEIESDSELSGREADVPLNAYSCDHFRIFEFKVRKCTRGRSHDWTECPYAHPGEKARRRDPRKYHYSGTACPDFRKGSCKKGDSCEFAHGVFECWLHPARYRTQPCKDGTNCRRRVCFFAHTPEQLRVLPQQSPRSANSPDSYDESPLRQSVDGSCSKTLPFLSSPVSVSPTATPVDSPPLSPMTRSLGRSLGSTSINEMVASLRNLHLSKVKSLPSSWNVQIGSPGYPSRVCHGFCSLPTTPTRAPTGHGVGLLDFTEHGFEEEPVMERVESGRELRAKMLEKLSKENSLDWAESNPSTCTPDVEWVSELVK* | 383 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 25366330 | 25368616 | - | CsaV3_1G040060.1 | Csa01g02890 | 517387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Csa01g02890 | 382 | MobiDBLite | consensus disorder prediction | 197 | 223 | - | - | |
| Csa01g02890 | 382 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 8 | 382 | - | - | |
| Csa01g02890 | 382 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 139 | 159 | IPR000571 | GO:0046872 | |
| Csa01g02890 | 382 | SMART | c3hfinal6 | 134 | 160 | IPR000571 | GO:0046872 | |
| Csa01g02890 | 382 | SMART | c3hfinal6 | 169 | 192 | IPR000571 | GO:0046872 | |
| Csa01g02890 | 382 | PANTHER | UNKEMPT FAMILY MEMBER | 8 | 382 | IPR045234 | - | |
| Csa01g02890 | 382 | SUPERFAMILY | CCCH zinc finger | 133 | 163 | IPR036855 | GO:0046872 | |
| Csa01g02890 | 382 | ProSiteProfiles | Zinc finger C3H1-type profile. | 135 | 161 | IPR000571 | GO:0046872 | |
| Csa01g02890 | 382 | Gene3D | - | 134 | 198 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Csa01g02890 | Csa-Chr1:25366330 | Csa02g01860 | Csa-Chr2:17700459 | 5.40E-79 | dispersed | |
| Csa02g00066 | Csa-Chr2:479979 | Csa01g02890 | Csa-Chr1:25366330 | 3.23E-154 | transposed | |
| Csa07g00484 | Csa-Chr7:3508522 | Csa01g02890 | Csa-Chr1:25366330 | 1.42E-67 | transposed | |
| Csa01g02890 | Csa-Chr1:25366330 | Csa04g02516 | Csa-Chr4:24989859 | 2.77E-107 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 30811 | PF00642 | zf-CCCH | 1.70E-06 | CL0537 | Csa | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Csa01g02890 | - | - | csv:101204432 | 783.097 |